CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, plasma membrane, endoplasmic reticulum, plastid

Predictor Summary:

nucleus 1
plastid 2
extracellular 3
golgi 2
plasma membrane 3
endoplasmic reticulum 3
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, plasma membrane, plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	endoplasmic reticulum
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039124.1-P	Field mustard	plasma membrane	98.1	98.1
CDY49048	Canola	plasma membrane	92.38	92.38
AT3G01360.1	Thale cress	extracellular, plasma membrane, plastid	85.08	84.01
VIT_14s0066g01930.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	52.38	51.89
Solyc02g087260.1.1	Tomato	plasma membrane	50.48	47.32
PGSC0003DMT400003263	Potato	plasma membrane	50.16	47.02
GSMUA_Achr8P20200_001	Banana	plasma membrane	40.0	40.26
OQU76145	Sorghum	extracellular, plasma membrane, plastid	34.6	36.21
TraesCS7D01G197200.1	Wheat	extracellular, plasma membrane	34.6	35.74
TraesCS7B01G101400.1	Wheat	plasma membrane	34.6	35.74
TraesCS7A01G195700.1	Wheat	plasma membrane	34.6	35.74
Zm00001d037263_P001	Maize	plasma membrane	33.33	34.88
Os06t0238900-01	Rice	extracellular, plasma membrane	33.97	34.63
HORVU7Hr1G039900.1	Barley	extracellular, mitochondrion, plastid	33.97	31.56
CDY08230	Canola	plasma membrane	18.1	19.93
CDY35545	Canola	extracellular, plasma membrane	16.19	19.62
CDY29937	Canola	plasma membrane	16.19	19.32
CDY16500	Canola	plasma membrane	17.46	18.39
CDX77245	Canola	plasma membrane	17.14	18.06
CDY26121	Canola	extracellular, plasma membrane, vacuole	17.78	17.72
CDY10579	Canola	plasma membrane	16.19	17.65
CDY65755	Canola	endoplasmic reticulum, extracellular, plasma membrane	15.87	17.3
CDY10576	Canola	endoplasmic reticulum, extracellular, plasma membrane	15.87	17.3
CDY65753	Canola	plasma membrane	16.19	16.72
CDY44949	Canola	extracellular, plasma membrane	15.87	16.56
CDY42309	Canola	plasma membrane	15.87	16.56
CDY10580	Canola	endoplasmic reticulum, plasma membrane, vacuole	15.56	16.44

Protein Annotations

EnsemblPlants:CDY37527	EnsemblPlantsGene:GSBRNA2T00064145001	GO:A0A078HI89	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:DUF716_TMEM45	PANTHER:PTHR16007	PANTHER:PTHR16007:SF9	PFAM:PF04819	ProteinID:CDY37527	ProteinID:CDY37527.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EDBC0C	UniProt:A0A078HI89	MapMan:35.2	:

Description

BnaA05g33920DBnaA05g33920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HI89]

Coordinates

chrLK032402:+:160162..161219

Molecular Weight (calculated)

34279.1 Da

IEP (calculated)

6.599

GRAVY (calculated)

0.204

Length

315 amino acids

Sequence
(BLAST)

001: MGILSYAVAG GGFAVIGAWE SLDSSNLDQN PSSPTADQIT PSPPKSTGSS SIPVALLSSL FIANSIYSFF SSIGSSDRVG SMLQLQILAV AVLFLVYAVV
101: THLVNSKNGS FAALPSSITS LLLLFGFIEE FLMFYLQKKD TSGIENRYYD LMLVPIAVCV FSTVFELKSD STTHRFAKLG RGIGLILQGT WFLQMGISFF
201: TGLITNNCSF HEKSRGNFTV KCKGHGDYHR AKAIATLQFN CHLALMVVLA TALFSVVANK KGFLREDHSK YRPLGAEMEN LSNFTLDSDE EEDEVRQDNH
301: VAKETAINGI ISSHA

Best Arabidopsis Sequence Match ( AT3G01360.2 )
(BLAST)

001: MGILSYAVAG GGFAVIGAWE SLDSSNLDPN SSSGTADSSS PMAQIRASPP KSVGSSSIPV ALLSSLFIAN SFFSFFSSIG SRDRVGSMIQ LQIVAVAVLF
101: LYYAILTYLV NSKNAVFVAL PSSITTLLLL FGFIEEFLMF YLQKKDVSGI ENRYYDLMLV PIAICVFSTV FELKSDSSTH RFAKLGRGIG LILQGTWFLQ
201: MGVSFFTGLI TNNCTFHEKS RGNFTIKCKG HGDYHRAKAI ATLQFNCHLA LMVVVATGLF SVIANKNGYL RQDHSKYRPL GAELENLSTF TLDSDEEDEV
301: REESNVAKEV GLNGNSSHD

Arabidopsis Description

At3g01360 [Source:UniProtKB/TrEMBL;Acc:Q9SRI3]
SUBAcon: [extracellular,plasma membrane,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.