Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, extracellular
Predictor Summary:
Predictor Summary:
- plastid 3
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 3
- golgi 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY49048 | Canola | plasma membrane | 84.64 | 85.71 |
| Bra039124.1-P | Field mustard | plasma membrane | 84.01 | 85.08 |
| CDY37527 | Canola | endoplasmic reticulum, extracellular, plasma membrane, plastid | 84.01 | 85.08 |
| VIT_14s0066g01930.t01 | Wine grape | endoplasmic reticulum, extracellular, plasma membrane | 50.16 | 50.31 |
| Solyc02g087260.1.1 | Tomato | plasma membrane | 49.84 | 47.32 |
| PGSC0003DMT400003263 | Potato | plasma membrane | 49.53 | 47.02 |
| GSMUA_Achr8P20200_001 | Banana | plasma membrane | 39.81 | 40.58 |
| OQU76145 | Sorghum | extracellular, plasma membrane, plastid | 33.86 | 35.88 |
| TraesCS7D01G197200.1 | Wheat | extracellular, plasma membrane | 33.54 | 35.08 |
| Zm00001d037263_P001 | Maize | plasma membrane | 32.92 | 34.88 |
| TraesCS7B01G101400.1 | Wheat | plasma membrane | 33.23 | 34.75 |
| TraesCS7A01G195700.1 | Wheat | plasma membrane | 33.23 | 34.75 |
| Os06t0238900-01 | Rice | extracellular, plasma membrane | 32.92 | 33.98 |
| HORVU7Hr1G039900.1 | Barley | extracellular, mitochondrion, plastid | 32.92 | 30.97 |
| AT1G32127.1 | Thale cress | plasma membrane | 15.36 | 18.56 |
| AT1G55230.1 | Thale cress | plasma membrane | 16.61 | 17.67 |
| AT1G55240.1 | Thale cress | plasma membrane | 16.61 | 17.04 |
| AT1G49470.1 | Thale cress | plasma membrane | 15.99 | 16.89 |
| AT5G19870.1 | Thale cress | plasma membrane | 14.11 | 16.3 |
Protein Annotations
| MapMan:35.2 | EntrezGene:821158 | ProteinID:AAF03491.1 | ProteinID:AEE73655.1 | ProteinID:AEE73656.1 | EMBL:AK229512 |
| ArrayExpress:AT3G01360 | EnsemblPlantsGene:AT3G01360 | RefSeq:AT3G01360 | TAIR:AT3G01360 | RefSeq:AT3G01360-TAIR-G | EnsemblPlants:AT3G01360.1 |
| TAIR:AT3G01360.1 | Unigene:At.41288 | EMBL:BT011731 | InterPro:DUF716_TMEM45 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | RefSeq:NP_001030617.1 | RefSeq:NP_186785.1 | PFAM:PF04819 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR16007 | PANTHER:PTHR16007:SF9 |
| UniProt:Q9SRI3 | TMHMM:TMhelix | UniParc:UPI00000A852E | SEG:seg | : | : |
Description
At3g01360 [Source:UniProtKB/TrEMBL;Acc:Q9SRI3]
Coordinates
chr3:-:136399..138731
Molecular Weight (calculated)
34764.7 Da
IEP (calculated)
6.625
GRAVY (calculated)
0.229
Length
319 amino acids
Sequence
(BLAST)
(BLAST)
001: MGILSYAVAG GGFAVIGAWE SLDSSNLDPN SSSGTADSSS PMAQIRASPP KSVGSSSIPV ALLSSLFIAN SFFSFFSSIG SRDRVGSMIQ LQIVAVAVLF
101: LYYAILTYLV NSKNAVFVAL PSSITTLLLL FGFIEEFLMF YLQKKDVSGI ENRYYDLMLV PIAICVFSTV FELKSDSSTH RFAKLGRGIG LILQGTWFLQ
201: MGVSFFTGLI TNNCTFHEKS RGNFTIKCKG HGDYHRAKAI ATLQFNCHLA LMVVVATGLF SVIANKNGYL RQDHSKYRPL GAELENLSTF TLDSDEEDEV
301: REESNVAKEV GLNGNSSHD
101: LYYAILTYLV NSKNAVFVAL PSSITTLLLL FGFIEEFLMF YLQKKDVSGI ENRYYDLMLV PIAICVFSTV FELKSDSSTH RFAKLGRGIG LILQGTWFLQ
201: MGVSFFTGLI TNNCTFHEKS RGNFTIKCKG HGDYHRAKAI ATLQFNCHLA LMVVVATGLF SVIANKNGYL RQDHSKYRPL GAELENLSTF TLDSDEEDEV
301: REESNVAKEV GLNGNSSHD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.