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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 1
  • extracellular 5
  • endoplasmic reticulum 4
  • vacuole 4
  • plasma membrane 6
  • golgi 4
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:plastid, secretory
BaCelLo:plastid
iPSORT:secretory
MultiLoc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY10580 Canola endoplasmic reticulum, plasma membrane, vacuole 79.42 82.89
Bra030875.1-P Field mustard extracellular, plasma membrane 78.14 78.64
CDY65755 Canola endoplasmic reticulum, extracellular, plasma membrane 65.59 70.59
CDY10576 Canola endoplasmic reticulum, extracellular, plasma membrane 65.59 70.59
CDY10579 Canola plasma membrane 64.95 69.9
AT1G55230.1 Thale cress plasma membrane 65.59 68.0
CDY65753 Canola plasma membrane 65.27 66.56
VIT_02s0087g00750.t01 Wine grape extracellular, plasma membrane 59.16 60.13
GSMUA_Achr5P23140_001 Banana endoplasmic reticulum, extracellular, plasma membrane 58.84 58.65
KRH51013 Soybean extracellular, plasma membrane 57.88 57.69
AT5G19870.1 Thale cress plasma membrane 51.13 57.61
GSMUA_Achr7P18580_001 Banana extracellular, plasma membrane, vacuole 50.16 57.14
KRH51014 Soybean extracellular, plasma membrane 56.27 56.63
KRH20920 Soybean plasma membrane 55.63 56.17
GSMUA_Achr10P... Banana extracellular, plasma membrane 48.23 55.97
VIT_06s0004g00960.t01 Wine grape extracellular, plasma membrane, vacuole 54.98 55.88
GSMUA_Achr3P07810_001 Banana extracellular, plasma membrane 54.02 54.02
PGSC0003DMT400082049 Potato extracellular, plasma membrane 54.66 53.63
Solyc01g017600.2.1 Tomato extracellular, plasma membrane, vacuole 52.73 52.56
Solyc01g006050.2.1 Tomato extracellular, golgi, plasma membrane 53.38 52.53
KRH02131 Soybean plasma membrane 34.73 52.43
KRH36022 Soybean plasma membrane 51.13 52.3
Solyc04g014520.1.1 Tomato plasma membrane 49.84 52.19
PGSC0003DMT400048713 Potato extracellular, plasma membrane, vacuole 52.41 52.08
KRH65232 Soybean plasma membrane 49.52 51.51
TraesCS3A01G084100.1 Wheat plasma membrane 51.45 50.79
KRG90737 Soybean plasma membrane 50.48 50.65
TraesCS5B01G229600.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 50.8 49.84
TraesCS5A01G231300.1 Wheat plasma membrane 50.48 49.68
TraesCS5D01G236600.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 50.48 49.37
TraesCS5A01G231100.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 50.16 49.21
Zm00001d020652_P001 Maize endoplasmic reticulum, plasma membrane, vacuole 49.52 48.43
Solyc01g006070.2.1 Tomato extracellular, plasma membrane 47.59 48.05
EER98987 Sorghum endoplasmic reticulum, plasma membrane 49.2 47.81
HORVU5Hr1G066720.1 Barley endoplasmic reticulum 49.84 47.69
KRH11368 Soybean extracellular 11.58 46.15
Os08t0462800-01 Rice extracellular, plasma membrane 46.62 46.03
Os09t0444900-01 Rice peroxisome, plasma membrane 51.45 45.85
OQU80608 Sorghum endoplasmic reticulum, extracellular, plasma membrane 46.62 45.6
EER98986 Sorghum endoplasmic reticulum, plasma membrane 44.37 44.81
Zm00001d020651_P001 Maize plasma membrane 44.05 44.48
Os09t0444800-01 Rice mitochondrion, plasma membrane, plastid 44.69 44.13
Zm00001d035422_P001 Maize extracellular 25.4 42.7
TraesCS5A01G231200.1 Wheat plasma membrane 42.77 42.22
TraesCS5B01G229500.1 Wheat plasma membrane 42.12 41.59
TraesCS5D01G236700.1 Wheat plasma membrane 41.8 41.27
HORVU5Hr1G066680.1 Barley extracellular, plasma membrane 42.12 41.2
EER98982 Sorghum cytosol, peroxisome, plasma membrane 44.37 39.2
OQU93027 Sorghum extracellular 18.33 36.31
OQU84010 Sorghum endoplasmic reticulum, extracellular, plasma membrane 36.98 35.49
AT1G49470.1 Thale cress plasma membrane 33.76 34.77
HORVU5Hr1G066700.1 Barley plastid 26.69 32.17
AT1G32127.1 Thale cress plasma membrane 25.4 29.92
Zm00001d048662_P001 Maize plasma membrane 31.19 28.53
KXG29783 Sorghum extracellular, plasma membrane 26.37 27.06
AT3G01360.1 Thale cress extracellular, plasma membrane, plastid 17.04 16.61
Protein Annotations
MapMan:35.2EntrezGene:841967ProteinID:AEE33209.1EMBL:AK228776ArrayExpress:AT1G55240EnsemblPlantsGene:AT1G55240
RefSeq:AT1G55240TAIR:AT1G55240RefSeq:AT1G55240-TAIR-GEnsemblPlants:AT1G55240.1TAIR:AT1G55240.1Unigene:At.37095
EMBL:BT011215EMBL:BT012146InterPro:DUF716_TMEM45GO:GO:0005575GO:GO:0016020GO:GO:0016021
RefSeq:NP_175920.2PFAM:PF04819PO:PO:0007616PO:PO:0009005PO:PO:0009046PO:PO:0020100
PANTHER:PTHR16007PANTHER:PTHR16007:SF27UniProt:Q6NM31TMHMM:TMhelixUniParc:UPI00001970AESEG:seg
Description
At1g55240 [Source:UniProtKB/TrEMBL;Acc:Q6NM31]
Coordinates
chr1:+:20604892..20606411
Molecular Weight (calculated)
35028.7 Da
IEP (calculated)
7.331
GRAVY (calculated)
0.325
Length
311 amino acids
Sequence
(BLAST)
001: MGSFLGHVLP GFAFVALGLW HLFNNIKLFC LHPNTFSSST WFPISKLRHL ELYLIMLSST ASISMELFIG PRRHHPFDVD GTIPSNHLHN FEHSSISMSF
101: LVYAVLALVL DRARPRAAAS EGLTMLAAAA AFSQQLLLFH FHSTDHMGVE GQYHVILQVV IFVSLLTTIM GIFLPKSFLV SLVRSSSIAF QGVWLIVIGC
201: MLYTPSLIPK GCYIHDEGRH IIVKCSTEEA LHRAKSLVNL EFSWLFVTNT LFVVTLYLIL DRVYGENVEY SSLTTNNQTY QDDEEQHFES KSTQKTSFVQ
301: MGKLVGHGQK M
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.