Subcellular Localization
min:
: max
Winner_takes_all: extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- extracellular 5
- golgi 4
- plasma membrane 6
- endoplasmic reticulum 4
- vacuole 4
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY65755 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 80.26 | 85.81 |
| CDY10576 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 80.26 | 85.81 |
| CDY10579 | Canola | plasma membrane | 79.94 | 85.47 |
| CDY65753 | Canola | plasma membrane | 80.58 | 81.64 |
| AT1G55240.1 | Thale cress | plasma membrane | 78.64 | 78.14 |
| Bra011903.1-P | Field mustard | cytosol | 49.19 | 65.8 |
| VIT_02s0087g00750.t01 | Wine grape | extracellular, plasma membrane | 58.25 | 58.82 |
| GSMUA_Achr7P18580_001 | Banana | extracellular, plasma membrane, vacuole | 50.16 | 56.78 |
| GSMUA_Achr10P... | Banana | extracellular, plasma membrane | 48.54 | 55.97 |
| GSMUA_Achr5P23140_001 | Banana | endoplasmic reticulum, extracellular, plasma membrane | 55.99 | 55.45 |
| KRH20920 | Soybean | plasma membrane | 55.02 | 55.19 |
| KRH51013 | Soybean | extracellular, plasma membrane | 55.34 | 54.81 |
| VIT_06s0004g00960.t01 | Wine grape | extracellular, plasma membrane, vacuole | 53.72 | 54.25 |
| Bra020070.1-P | Field mustard | extracellular, plasma membrane | 52.43 | 53.64 |
| PGSC0003DMT400082049 | Potato | extracellular, plasma membrane | 54.69 | 53.31 |
| KRH51014 | Soybean | extracellular, plasma membrane | 53.07 | 53.07 |
| KRH11368 | Soybean | extracellular | 13.27 | 52.56 |
| Solyc04g014520.1.1 | Tomato | plasma membrane | 50.49 | 52.53 |
| GSMUA_Achr3P07810_001 | Banana | extracellular, plasma membrane | 52.43 | 52.09 |
| Solyc01g017600.2.1 | Tomato | extracellular, plasma membrane, vacuole | 52.43 | 51.92 |
| Solyc01g006050.2.1 | Tomato | extracellular, golgi, plasma membrane | 52.43 | 51.27 |
| PGSC0003DMT400048713 | Potato | extracellular, plasma membrane, vacuole | 51.78 | 51.12 |
| TraesCS5A01G231300.1 | Wheat | plasma membrane | 51.78 | 50.63 |
| TraesCS5D01G236600.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 51.46 | 50.0 |
| TraesCS5A01G231100.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 51.13 | 49.84 |
| TraesCS5B01G229600.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 51.13 | 49.84 |
| TraesCS3A01G084100.1 | Wheat | plasma membrane | 50.81 | 49.84 |
| Os08t0462800-01 | Rice | extracellular, plasma membrane | 50.16 | 49.21 |
| OQU80608 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 50.49 | 49.06 |
| Zm00001d020652_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 50.16 | 48.74 |
| KRH02131 | Soybean | plasma membrane | 32.36 | 48.54 |
| KRH36022 | Soybean | plasma membrane | 47.25 | 48.03 |
| HORVU5Hr1G066720.1 | Barley | endoplasmic reticulum | 50.16 | 47.69 |
| EER98987 | Sorghum | endoplasmic reticulum, plasma membrane | 49.19 | 47.5 |
| KRH65232 | Soybean | plasma membrane | 45.95 | 47.49 |
| KRG90737 | Soybean | plasma membrane | 47.57 | 47.42 |
| Solyc01g006070.2.1 | Tomato | extracellular, plasma membrane | 46.93 | 47.08 |
| EER98986 | Sorghum | endoplasmic reticulum, plasma membrane | 45.31 | 45.45 |
| Zm00001d020651_P001 | Maize | plasma membrane | 44.01 | 44.16 |
| Os09t0444900-01 | Rice | peroxisome, plasma membrane | 49.84 | 44.13 |
| Os09t0444800-01 | Rice | mitochondrion, plasma membrane, plastid | 44.34 | 43.49 |
| TraesCS5A01G231200.1 | Wheat | plasma membrane | 43.37 | 42.54 |
| TraesCS5D01G236700.1 | Wheat | plasma membrane | 42.72 | 41.9 |
| Zm00001d035422_P001 | Maize | extracellular | 24.92 | 41.62 |
| TraesCS5B01G229500.1 | Wheat | plasma membrane | 42.39 | 41.59 |
| HORVU5Hr1G066680.1 | Barley | extracellular, plasma membrane | 42.39 | 41.2 |
| OQU93027 | Sorghum | extracellular | 20.06 | 39.49 |
| EER98982 | Sorghum | cytosol, peroxisome, plasma membrane | 44.66 | 39.2 |
| Bra014190.1-P | Field mustard | plasma membrane | 34.63 | 35.79 |
| OQU84010 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 36.89 | 35.19 |
| Bra033853.1-P | Field mustard | extracellular, plasma membrane | 26.21 | 30.68 |
| HORVU5Hr1G066700.1 | Barley | plastid | 25.24 | 30.23 |
| Zm00001d048662_P001 | Maize | plasma membrane | 30.42 | 27.65 |
| KXG29783 | Sorghum | extracellular, plasma membrane | 25.57 | 26.07 |
| Bra039124.1-P | Field mustard | plasma membrane | 18.45 | 18.1 |
Protein Annotations
| EnsemblPlants:Bra030875.1 | EnsemblPlants:Bra030875.1-P | EnsemblPlantsGene:Bra030875 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:DUF716_TMEM45 | PANTHER:PTHR16007 | PANTHER:PTHR16007:SF27 | PFAM:PF04819 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0002547240 | UniProt:M4EQ04 | MapMan:35.2 | : | : | : |
Description
AT1G55240 (E=2e-134) | unknown protein
Coordinates
chrA08:-:435586..436873
Molecular Weight (calculated)
35043.9 Da
IEP (calculated)
6.878
GRAVY (calculated)
0.399
Length
309 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTLVGHVLP GLAFLALGLW HLFNNIKLFC LRPNIFYSSI WFPVSKIRYL ELYFIMFSSS ASISMELFVG PRKHQPFDSD GTIPSNHLHN FEHSFISMSF
101: LVYAVLALVL DRARPRAPAS EGLTILAAAA AFSQELLLFH FHSTDHVGFE GQYHLILQLI IFVSLLTTLM GVALPKSFLV SLVRSSSIVF QGVWFIFLGC
201: MLYTPSLIPK GCFIYVEDGH QLVNCSTQEA LHRAKALVNL EFSCLFVINT ICVVTLFLIM DRNYGGNIEY SSLTTNYQRG QYDEEQQHFE TQKMSFVQMG
301: KLVDHEDKM
101: LVYAVLALVL DRARPRAPAS EGLTILAAAA AFSQELLLFH FHSTDHVGFE GQYHLILQLI IFVSLLTTLM GVALPKSFLV SLVRSSSIVF QGVWFIFLGC
201: MLYTPSLIPK GCFIYVEDGH QLVNCSTQEA LHRAKALVNL EFSCLFVINT ICVVTLFLIM DRNYGGNIEY SSLTTNYQRG QYDEEQQHFE TQKMSFVQMG
301: KLVDHEDKM
001: MGSFLGHVLP GFAFVALGLW HLFNNIKLFC LHPNTFSSST WFPISKLRHL ELYLIMLSST ASISMELFIG PRRHHPFDVD GTIPSNHLHN FEHSSISMSF
101: LVYAVLALVL DRARPRAAAS EGLTMLAAAA AFSQQLLLFH FHSTDHMGVE GQYHVILQVV IFVSLLTTIM GIFLPKSFLV SLVRSSSIAF QGVWLIVIGC
201: MLYTPSLIPK GCYIHDEGRH IIVKCSTEEA LHRAKSLVNL EFSWLFVTNT LFVVTLYLIL DRVYGENVEY SSLTTNNQTY QDDEEQHFES KSTQKTSFVQ
301: MGKLVGHGQK M
101: LVYAVLALVL DRARPRAAAS EGLTMLAAAA AFSQQLLLFH FHSTDHMGVE GQYHVILQVV IFVSLLTTIM GIFLPKSFLV SLVRSSSIAF QGVWLIVIGC
201: MLYTPSLIPK GCYIHDEGRH IIVKCSTEEA LHRAKSLVNL EFSWLFVTNT LFVVTLYLIL DRVYGENVEY SSLTTNNQTY QDDEEQHFES KSTQKTSFVQ
301: MGKLVGHGQK M
Arabidopsis Description
At1g55240 [Source:UniProtKB/TrEMBL;Acc:Q6NM31]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.