Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 5
- golgi 4
- plasma membrane 6
- endoplasmic reticulum 4
- vacuole 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16500 | Canola | plasma membrane | 87.09 | 87.96 |
| Bra014190.1-P | Field mustard | plasma membrane | 86.09 | 86.96 |
| CDX77245 | Canola | plasma membrane | 85.1 | 85.95 |
| KRH24549 | Soybean | plasma membrane | 53.64 | 54.92 |
| KRH29555 | Soybean | extracellular, plasma membrane | 52.98 | 54.05 |
| GSMUA_Achr7P12360_001 | Banana | plasma membrane | 46.36 | 47.78 |
| Solyc10g050430.1.1 | Tomato | extracellular, plasma membrane | 46.03 | 47.44 |
| PGSC0003DMT400015915 | Potato | extracellular, plasma membrane | 45.7 | 47.1 |
| Os08t0462900-01 | Rice | extracellular, plasma membrane | 46.03 | 45.13 |
| VIT_03s0063g01730.t01 | Wine grape | mitochondrion | 53.97 | 43.7 |
| OQU80610 | Sorghum | plasma membrane | 42.72 | 37.28 |
| AT1G55230.1 | Thale cress | plasma membrane | 36.76 | 37.0 |
| AT5G19870.1 | Thale cress | plasma membrane | 33.44 | 36.59 |
| AT1G55240.1 | Thale cress | plasma membrane | 34.77 | 33.76 |
| AT1G32127.1 | Thale cress | plasma membrane | 25.83 | 29.55 |
| AT3G01360.1 | Thale cress | extracellular, plasma membrane, plastid | 16.89 | 15.99 |
Protein Annotations
| MapMan:35.2 | EntrezGene:841370 | ProteinID:AAD43171.1 | ProteinID:AEE32432.1 | ArrayExpress:AT1G49470 | EnsemblPlantsGene:AT1G49470 |
| RefSeq:AT1G49470 | TAIR:AT1G49470 | RefSeq:AT1G49470-TAIR-G | EnsemblPlants:AT1G49470.1 | TAIR:AT1G49470.1 | EMBL:BT025653 |
| InterPro:DUF716_TMEM45 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_564546.1 | PFAM:PF04819 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR16007 | PANTHER:PTHR16007:SF14 | UniProt:Q9XIB3 | TMHMM:TMhelix | UniParc:UPI00000A7022 |
| SEG:seg | : | : | : | : | : |
Description
At1g49470 [Source:UniProtKB/TrEMBL;Acc:Q9XIB3]
Coordinates
chr1:+:18310428..18311714
Molecular Weight (calculated)
33621.1 Da
IEP (calculated)
7.501
GRAVY (calculated)
0.532
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTFLGHFVP GLSLALLGLW HLFNTIRSYC LKGPEAFSAK FWFPFPKLKH LELILILFFS FLSITLLTLD FPNFNFSSLK PDNLEHASMF LHLIIFACFA
101: LFCELTLCSD LFSGLIGVLS ASVFAQELFL LHFHSTDHSG LEGHYHFLLQ LIAFVSFSSA LASASFPKSF SAALFLPISV MFQGCWFLNM GFMLWIPEYV
201: PRGCVSNMST STDNNRRSVY HSGAVACESP GAEIRAKALA NLQFSWMLSA ILIITCALCL KYSGKVVLPK IRSSLEYERL CRQGSDRSAT VTVEAPASSD
301: QQ
101: LFCELTLCSD LFSGLIGVLS ASVFAQELFL LHFHSTDHSG LEGHYHFLLQ LIAFVSFSSA LASASFPKSF SAALFLPISV MFQGCWFLNM GFMLWIPEYV
201: PRGCVSNMST STDNNRRSVY HSGAVACESP GAEIRAKALA NLQFSWMLSA ILIITCALCL KYSGKVVLPK IRSSLEYERL CRQGSDRSAT VTVEAPASSD
301: QQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.