CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77245	Canola	plasma membrane	93.98	93.98
AT1G49470.1	Thale cress	plasma membrane	87.96	87.09
KRH24549	Soybean	plasma membrane	55.52	56.27
KRH29555	Soybean	extracellular, plasma membrane	54.52	55.07
GSMUA_Achr7P12360_001	Banana	plasma membrane	47.16	48.12
PGSC0003DMT400015915	Potato	extracellular, plasma membrane	46.82	47.78
Solyc10g050430.1.1	Tomato	extracellular, plasma membrane	46.49	47.44
Os08t0462900-01	Rice	extracellular, plasma membrane	46.82	45.45
VIT_03s0063g01730.t01	Wine grape	mitochondrion	55.85	44.77
OQU80610	Sorghum	plasma membrane	42.81	36.99
CDY26121	Canola	extracellular, plasma membrane, vacuole	37.46	35.44
CDY65755	Canola	endoplasmic reticulum, extracellular, plasma membrane	33.44	34.6
CDY10576	Canola	endoplasmic reticulum, extracellular, plasma membrane	33.44	34.6
CDY10579	Canola	plasma membrane	33.11	34.26
CDY08230	Canola	plasma membrane	31.77	33.22
CDY65753	Canola	plasma membrane	33.11	32.46
CDY44949	Canola	extracellular, plasma membrane	32.78	32.45
CDY42309	Canola	plasma membrane	32.44	32.12
CDY10580	Canola	endoplasmic reticulum, plasma membrane, vacuole	30.1	30.2
CDY35545	Canola	extracellular, plasma membrane	25.42	29.23
CDY29937	Canola	plasma membrane	25.75	29.17
CDY37527	Canola	endoplasmic reticulum, extracellular, plasma membrane, plastid	18.39	17.46
CDY49048	Canola	plasma membrane	18.06	17.14

Protein Annotations

EnsemblPlants:CDY16500	EnsemblPlantsGene:GSBRNA2T00091098001	GO:A0A078FPV0	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:DUF716_TMEM45	PANTHER:PTHR16007	PANTHER:PTHR16007:SF14	PFAM:PF04819	ProteinID:CDY16500	ProteinID:CDY16500.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE4DCD	UniProt:A0A078FPV0	MapMan:35.2	:

Description

BnaA08g02670DBnaA08g02670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FPV0]

Coordinates

chrLK032064:+:498990..499889

Molecular Weight (calculated)

33182.6 Da

IEP (calculated)

7.545

GRAVY (calculated)

0.639

Length

299 amino acids

Sequence
(BLAST)

001: MGTFLGHFVP GLSLALLGLW HLFNIIRSYC LKGPETFSAK FWFPFPKLKH LELVLILFFS FFAIILLTID FPDFNFSSFK PDNLEHASMF LHLIIFACFA
101: LFCELTLSSD LFSGIIGILS ASVFAQELFL LHFHSTDHLG LEGHYHFLLQ LIAFVSFSSA LASASFPKSF SAALVLSVSV MFQGCWFLNM GFMLWVPGYV
201: PRGCVSNTTA SDNRSFVHSS AVACESPGAE VRAKALANLQ FSWILSAILI ITCALCFKFS GKVVLPKNRS SSEYERLCRQ GSDRSPALTV EIPASSVHQ

Best Arabidopsis Sequence Match ( AT1G49470.1 )
(BLAST)

001: MGTFLGHFVP GLSLALLGLW HLFNTIRSYC LKGPEAFSAK FWFPFPKLKH LELILILFFS FLSITLLTLD FPNFNFSSLK PDNLEHASMF LHLIIFACFA
101: LFCELTLCSD LFSGLIGVLS ASVFAQELFL LHFHSTDHSG LEGHYHFLLQ LIAFVSFSSA LASASFPKSF SAALFLPISV MFQGCWFLNM GFMLWIPEYV
201: PRGCVSNMST STDNNRRSVY HSGAVACESP GAEIRAKALA NLQFSWMLSA ILIITCALCL KYSGKVVLPK IRSSLEYERL CRQGSDRSAT VTVEAPASSD
301: QQ

Arabidopsis Description

At1g49470 [Source:UniProtKB/TrEMBL;Acc:Q9XIB3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.