Factsheet for PGSC0003DMT400015915

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

plastid 2
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 5
golgi 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g050430.1.1	Tomato	extracellular, plasma membrane	92.83	92.83
KRH24549	Soybean	plasma membrane	53.24	52.88
KRH29555	Soybean	extracellular, plasma membrane	51.54	51.01
CDX77245	Canola	plasma membrane	48.81	47.83
GSMUA_Achr7P12360_001	Banana	plasma membrane	47.44	47.44
Bra014190.1-P	Field mustard	plasma membrane	47.78	46.82
CDY16500	Canola	plasma membrane	47.78	46.82
AT1G49470.1	Thale cress	plasma membrane	47.1	45.7
Os08t0462900-01	Rice	extracellular, plasma membrane	45.73	43.51
VIT_03s0063g01730.t01	Wine grape	mitochondrion	53.92	42.36
OQU80610	Sorghum	plasma membrane	46.76	39.6
PGSC0003DMT400082049	Potato	extracellular, plasma membrane	33.45	30.91
PGSC0003DMT400048713	Potato	extracellular, plasma membrane, vacuole	31.06	29.07
PGSC0003DMT400079341	Potato	extracellular, plasma membrane	26.96	28.83
PGSC0003DMT400003263	Potato	plasma membrane	17.06	14.88

Protein Annotations

EnsemblPlants:PGSC0003DMT400015915	EnsemblPlantsGene:PGSC0003DMG400006222	EntrezGene:102600392	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:DUF716_TMEM45	PANTHER:PTHR16007	PANTHER:PTHR16007:SF14	PFAM:PF04819	PGSC:PGSC0003DMG400006222	RefSeq:XP_006356592.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0002956383	UniProt:M1A6T7	MapMan:35.2	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400006222]

Coordinates

chr10:+:42756949..42758933

Molecular Weight (calculated)

32833.4 Da

IEP (calculated)

7.464

GRAVY (calculated)

0.575

Length

293 amino acids

Sequence
(BLAST)

001: MGTFLGHLVP GLALALLGFW HAISTIRSNY HNGTTKFRSR FWYPFKSTSL PTLQHIDLIL VLSFSVFCIV IQFIDLPALH LSFKLHNIEH ATMFLHLTVF
101: VGFTLLAEIS NLHEILHGIL GILATSIFGQ ELFLLHYHST DHVGLEGHYH WLLQLVVCIS LISALVVTCF PSCFPAALVL SISVIFQGVW FMNMGFSLWF
201: PQFVPQGCIM QSSEGHESSS VHGAIMCQTD EADSRARAMA NLQFSWVIAA ILILVSGISL MFARNRADRT LLSKYEQLQN RGKDTPVTIN CLK

Best Arabidopsis Sequence Match ( AT1G49470.1 )
(BLAST)

001: MGTFLGHFVP GLSLALLGLW HLFNTIRSYC LKGPEAFSAK FWFPFPKLKH LELILILFFS FLSITLLTLD FPNFNFSSLK PDNLEHASMF LHLIIFACFA
101: LFCELTLCSD LFSGLIGVLS ASVFAQELFL LHFHSTDHSG LEGHYHFLLQ LIAFVSFSSA LASASFPKSF SAALFLPISV MFQGCWFLNM GFMLWIPEYV
201: PRGCVSNMST STDNNRRSVY HSGAVACESP GAEIRAKALA NLQFSWMLSA ILIITCALCL KYSGKVVLPK IRSSLEYERL CRQGSDRSAT VTVEAPASSD
301: QQ

Arabidopsis Description

At1g49470 [Source:UniProtKB/TrEMBL;Acc:Q9XIB3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.