Factsheet for PGSC0003DMT400079341

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, plasma membrane

Predictor Summary:

plastid 2
extracellular 4
golgi 3
plasma membrane 5
endoplasmic reticulum 3
vacuole 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g075970.2.1	Tomato	extracellular, plasma membrane	95.62	95.62
CDY29937	Canola	plasma membrane	70.07	72.73
AT1G32127.1	Thale cress	plasma membrane	69.71	72.35
CDY35545	Canola	extracellular, plasma membrane	68.25	71.92
Bra033853.1-P	Field mustard	extracellular, plasma membrane	68.25	70.83
KRH76363	Soybean	extracellular, plasma membrane	70.8	69.78
KRH39651	Soybean	plasma membrane	70.8	69.78
KRH07683	Soybean	extracellular	63.87	64.58
VIT_06s0009g01520.t01	Wine grape	endoplasmic reticulum, plasma membrane, plastid	27.74	63.33
VIT_03s0063g02210.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, mitochondrion	20.8	63.33
VIT_02s0033g00020.t01	Wine grape	endoplasmic reticulum, extracellular	23.72	62.5
VIT_02s0033g00010.t01	Wine grape	extracellular, plasma membrane	35.4	60.62
GSMUA_Achr11P...	Banana	extracellular, plasma membrane	65.69	60.0
TraesCS2A01G193200.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	53.28	57.94
TraesCS2D01G194300.1	Wheat	plasma membrane	57.66	54.3
TraesCS3B01G507100.1	Wheat	plasma membrane	56.2	52.92
TraesCS3D01G457800.1	Wheat	plasma membrane	55.84	52.58
TraesCS3A01G463700.1	Wheat	plasma membrane	56.2	52.2
HORVU3Hr1G099300.14	Barley	extracellular	56.57	50.82
TraesCS2B01G487900.1	Wheat	plasma membrane	52.92	50.35
Zm00001d036834_P002	Maize	plasma membrane	52.55	49.83
EES10142	Sorghum	extracellular, plasma membrane, plastid	54.01	49.66
Os11t0621000-01	Rice	extracellular, plasma membrane	55.84	49.51
TraesCS2B01G624500.1	Wheat	extracellular, plasma membrane, vacuole	46.35	49.22
TraesCSU01G182600.1	Wheat	extracellular, plasma membrane, vacuole	46.35	49.22
EES15542	Sorghum	extracellular, plasma membrane	52.92	49.15
TraesCS2A01G466000.1	Wheat	plasma membrane	52.19	49.14
Zm00001d048804_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	52.92	48.99
TraesCS2D01G466300.1	Wheat	plasma membrane	52.19	48.97
TraesCS2A01G465800.1	Wheat	plasma membrane	51.46	48.96
HORVU5Hr1G077170.1	Barley	extracellular	24.82	48.57
TraesCSU01G181800.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	48.54	46.83
TraesCSU01G010600.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	48.54	46.83
Zm00001d048859_P001	Maize	plasma membrane	48.18	46.64
HORVU1Hr1G038410.1	Barley	extracellular, plasma membrane	27.74	43.68
TraesCSU01G212900.1	Wheat	plasma membrane	48.54	43.18
HORVU2Hr1G036130.2	Barley	extracellular	27.37	39.47
HORVU2Hr1G124140.1	Barley	cytosol, mitochondrion	38.32	36.08
PGSC0003DMT400015915	Potato	extracellular, plasma membrane	28.83	26.96
PGSC0003DMT400048713	Potato	extracellular, plasma membrane, vacuole	29.93	26.2
PGSC0003DMT400082049	Potato	extracellular, plasma membrane	30.29	26.18
PGSC0003DMT400003263	Potato	plasma membrane	21.9	17.86

Protein Annotations

EnsemblPlants:PGSC0003DMT400079341	EnsemblPlantsGene:PGSC0003DMG400030882	EntrezGene:102584913	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:DUF716_TMEM45	PANTHER:PTHR16007	PANTHER:PTHR16007:SF43	PFAM:PF04819	PGSC:PGSC0003DMG400030882	RefSeq:XP_006364480.1
RefSeq:XP_006364481.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002956857	UniProt:M1D1N2	MapMan:35.2

Description

Plant viral-response family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030882]

Coordinates

chr8:-:48366123..48370236

Molecular Weight (calculated)

30153.2 Da

IEP (calculated)

6.901

GRAVY (calculated)

0.602

Length

274 amino acids

Sequence
(BLAST)

001: MGSFPGHVLP GTLFLVIGVW HIWSALVRYS SNPKSFRVRV WSPVPGFDGK LKYLELYVIA IGGFIDFCIE LFYSTHLKLL VHGVLNPTHM NNFEHAGMLL
101: MFVIFGLIVL LSEKTSFLPL PEGALCLIAA TAFSAEYFLF FFHSTTHKGL EGYYHLILVL LIGLCILTTI AGALMPTSFP VDLASGISVA LQGLWFYQTA
201: FTLYGPMMPD GCQLKGNDVM CRSEDSEVRG ELLANLQLFS MIFVVLAATT GAYGFAASKT GHKDIRNSHV PLDG

Best Arabidopsis Sequence Match ( AT1G32127.2 )
(BLAST)

001: MGSFKGHALP GTLFLVVGVW HIWSSVVRYI SNPSSFRVRV WHPVPGFNDR IKYLELYVVT IGSFIDLCIE FLYSTHLKFF VNGVLNPSHM NDFEHSGMLL
101: MFFILGFIAL LSEKTRLLPL PQEALCLIAA TAFTAECLLF FFHSTSHKGL EGYYHLLLVF LIGLCVISSI AGAICPTSFP VDLCNGIAMT LQGLWFYQTA
201: FTLYGPMMPQ GCSLKQNSVV CRSVDSEVSG EFLANFQLFS LVLAVLVCVV GSYVFAASRF GVSR

Arabidopsis Description

Plant viral-response family protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8APW5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.