Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 4
- golgi 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G487900.1 | Wheat | plasma membrane | 84.08 | 84.38 |
| TraesCS2A01G466000.1 | Wheat | plasma membrane | 84.08 | 83.51 |
| TraesCS2A01G465800.1 | Wheat | plasma membrane | 83.05 | 83.33 |
| TraesCS2D01G466300.1 | Wheat | plasma membrane | 84.08 | 83.22 |
| EES15542 | Sorghum | extracellular, plasma membrane | 81.31 | 79.66 |
| Zm00001d048804_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 67.82 | 66.22 |
| Zm00001d048859_P001 | Maize | plasma membrane | 64.71 | 66.08 |
| CDY35545 | Canola | extracellular, plasma membrane | 48.44 | 53.85 |
| KRH76363 | Soybean | extracellular, plasma membrane | 51.56 | 53.6 |
| Bra033853.1-P | Field mustard | extracellular, plasma membrane | 48.79 | 53.41 |
| GSMUA_Achr11P... | Banana | extracellular, plasma membrane | 55.36 | 53.33 |
| AT1G32127.1 | Thale cress | plasma membrane | 48.44 | 53.03 |
| CDY29937 | Canola | plasma membrane | 48.44 | 53.03 |
| Solyc08g075970.2.1 | Tomato | extracellular, plasma membrane | 50.17 | 52.92 |
| PGSC0003DMT400079341 | Potato | extracellular, plasma membrane | 49.83 | 52.55 |
| KRH39651 | Soybean | plasma membrane | 50.52 | 52.52 |
| KRH07683 | Soybean | extracellular | 47.06 | 50.18 |
| VIT_02s0033g00020.t01 | Wine grape | endoplasmic reticulum, extracellular | 16.61 | 46.15 |
| VIT_06s0009g01520.t01 | Wine grape | endoplasmic reticulum, plasma membrane, plastid | 19.03 | 45.83 |
| VIT_02s0033g00010.t01 | Wine grape | extracellular, plasma membrane | 25.26 | 45.62 |
| VIT_03s0063g02210.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, mitochondrion | 12.46 | 40.0 |
| Zm00001d020651_P001 | Maize | plasma membrane | 32.87 | 30.84 |
| Zm00001d020652_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 32.87 | 29.87 |
| Zm00001d035422_P001 | Maize | extracellular | 16.61 | 25.95 |
| Zm00001d048662_P001 | Maize | plasma membrane | 23.53 | 20.0 |
| Zm00001d037263_P001 | Maize | plasma membrane | 20.07 | 19.27 |
Protein Annotations
| EMBL:BT035788 | EnsemblPlants:Zm00001d036834_P002 | EnsemblPlants:Zm00001d036834_T002 | EnsemblPlantsGene:Zm00001d036834 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:DUF716_TMEM45 | PANTHER:PTHR16007 | PANTHER:PTHR16007:SF43 | PFAM:PF04819 | ProteinID:AQK82262.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI00017B6E18 | UniProt:B4FFA0 | MapMan:35.2 | : |
Description
C globular stage isoform 1
Coordinates
chr6:-:103292537..103293895
Molecular Weight (calculated)
30853.6 Da
IEP (calculated)
5.732
GRAVY (calculated)
0.560
Length
289 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSFNGHVLP GTLFLAVGLW RVWSSVARFA ADPPAFRVRT WNPLPKGPRL LELYLVAGGA FLDMCLELGG GILAGGARVG PDSLIYLEHA GMLLMFFLFG
101: ALALLSQKTS RYLPLTDGEL SLVAATAFTS ELLLFSYHSA THTGLEGYYH HLLVLLIGLC ILSTVLGALS PASFPADLAA GVLLTLQGLW FYQTALTLYG
201: PMLPAECGVD ADGHVDCRSR AAEERAEQLA NLQLFGVVFV AFVYVLGCYA VAAARYGHPD LAAMHDEHAA AYECRGGVGS RTEVECVAV
101: ALALLSQKTS RYLPLTDGEL SLVAATAFTS ELLLFSYHSA THTGLEGYYH HLLVLLIGLC ILSTVLGALS PASFPADLAA GVLLTLQGLW FYQTALTLYG
201: PMLPAECGVD ADGHVDCRSR AAEERAEQLA NLQLFGVVFV AFVYVLGCYA VAAARYGHPD LAAMHDEHAA AYECRGGVGS RTEVECVAV
001: MGSFKGHALP GTLFLVVGVW HIWSSVVRYI SNPSSFRVRV WHPVPGFNDR IKYLELYVVT IGSFIDLCIE FLYSTHLKFF VNGVLNPSHM NDFEHSGMLL
101: MFFILGFIAL LSEKTRLLPL PQEALCLIAA TAFTAECLLF FFHSTSHKGL EGYYHLLLVF LIGLCVISSI AGAICPTSFP VDLCNGIAMT LQGLWFYQTA
201: FTLYGPMMPQ GCSLKQNSVV CRSVDSEVSG EFLANFQLFS LVLAVLVCVV GSYVFAASRF GVSR
101: MFFILGFIAL LSEKTRLLPL PQEALCLIAA TAFTAECLLF FFHSTSHKGL EGYYHLLLVF LIGLCVISSI AGAICPTSFP VDLCNGIAMT LQGLWFYQTA
201: FTLYGPMMPQ GCSLKQNSVV CRSVDSEVSG EFLANFQLFS LVLAVLVCVV GSYVFAASRF GVSR
Arabidopsis Description
Plant viral-response family protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8APW5]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.