Factsheet for Zm00001d037263_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 5
golgi 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU76145	Sorghum	extracellular, plasma membrane, plastid	93.02	93.02
TraesCS7B01G101400.1	Wheat	plasma membrane	80.4	79.34
TraesCS7D01G197200.1	Wheat	extracellular, plasma membrane	79.4	78.36
TraesCS7A01G195700.1	Wheat	plasma membrane	79.07	78.03
Os06t0238900-01	Rice	extracellular, plasma membrane	79.4	77.35
HORVU7Hr1G039900.1	Barley	extracellular, mitochondrion, plastid	79.07	70.21
GSMUA_Achr8P20200_001	Banana	plasma membrane	49.5	47.6
VIT_14s0066g01930.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	36.88	34.91
Solyc02g087260.1.1	Tomato	plasma membrane	38.54	34.52
PGSC0003DMT400003263	Potato	plasma membrane	37.87	33.93
Bra039124.1-P	Field mustard	plasma membrane	35.22	33.65
CDY49048	Canola	plasma membrane	35.22	33.65
CDY37527	Canola	endoplasmic reticulum, extracellular, plasma membrane, plastid	34.88	33.33
AT3G01360.1	Thale cress	extracellular, plasma membrane, plastid	34.88	32.92
Zm00001d020652_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	23.92	22.64
Zm00001d048804_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	21.26	21.62
Zm00001d048859_P001	Maize	plasma membrane	20.27	21.55
Zm00001d020651_P001	Maize	plasma membrane	21.93	21.43
Zm00001d035422_P001	Maize	extracellular	12.96	21.08
Zm00001d036834_P002	Maize	plasma membrane	19.27	20.07
Zm00001d048662_P001	Maize	plasma membrane	20.6	18.24

Protein Annotations

EMBL:EU974698	EnsemblPlants:Zm00001d037263_P001	EnsemblPlants:Zm00001d037263_T001	EnsemblPlantsGene:Zm00001d037263	EntrezGene:100285926	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:DUF716_TMEM45	PANTHER:PTHR16007	PANTHER:PTHR16007:SF9	PFAM:PF04819
ProteinID:AQK83432.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI000182FB6E	UniProt:B6UBT3	MapMan:35.2

Description

TMV response protein%3B TMV response-related protein

Coordinates

chr6:-:118535144..118536049

Molecular Weight (calculated)

31868.9 Da

IEP (calculated)

7.150

GRAVY (calculated)

0.361

Length

301 amino acids

Sequence
(BLAST)

001: MPGLVAYSGL GLGLLALAAL ESLPLRVPPL RSLPRRLTTP LHLRHLLAAA VSALCLISAL VSAHHLSLPT LAASALFLLY SLAPFAPLAA PLPSPLLDLL
101: LAAAFAQELL LFAHRRPSTA AGIENRYFDL LLVPIALCLG ATLLAAHRPG EPAPRIARAA GLALQGTWML QMGFSFFTSA IAQGCALHAA SRADYTIKCR
201: THEDYHRARS VATLQFNGHL ALLVIAGAAA YAAVLSRSNR PPSGYSALDK EVQMEGMPMM SQFTLDSDEE KEEEVITSTA APVANGGESH DEIPLHEPGS
301: K

Best Arabidopsis Sequence Match ( AT3G01360.2 )
(BLAST)

001: MGILSYAVAG GGFAVIGAWE SLDSSNLDPN SSSGTADSSS PMAQIRASPP KSVGSSSIPV ALLSSLFIAN SFFSFFSSIG SRDRVGSMIQ LQIVAVAVLF
101: LYYAILTYLV NSKNAVFVAL PSSITTLLLL FGFIEEFLMF YLQKKDVSGI ENRYYDLMLV PIAICVFSTV FELKSDSSTH RFAKLGRGIG LILQGTWFLQ
201: MGVSFFTGLI TNNCTFHEKS RGNFTIKCKG HGDYHRAKAI ATLQFNCHLA LMVVVATGLF SVIANKNGYL RQDHSKYRPL GAELENLSTF TLDSDEEDEV
301: REESNVAKEV GLNGNSSHD

Arabidopsis Description

At3g01360 [Source:UniProtKB/TrEMBL;Acc:Q9SRI3]
SUBAcon: [plasma membrane,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.