Factsheet for PGSC0003DMT400003263

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 6
golgi 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g087260.1.1	Tomato	plasma membrane	95.54	95.54
VIT_14s0066g01930.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	52.98	55.97
CDY49048	Canola	plasma membrane	47.62	50.79
Bra039124.1-P	Field mustard	plasma membrane	47.02	50.16
CDY37527	Canola	endoplasmic reticulum, extracellular, plasma membrane, plastid	47.02	50.16
AT3G01360.1	Thale cress	extracellular, plasma membrane, plastid	47.02	49.53
GSMUA_Achr8P20200_001	Banana	plasma membrane	39.88	42.81
OQU76145	Sorghum	extracellular, plasma membrane, plastid	34.23	38.21
Zm00001d037263_P001	Maize	plasma membrane	33.93	37.87
TraesCS7D01G197200.1	Wheat	extracellular, plasma membrane	33.33	36.72
TraesCS7A01G195700.1	Wheat	plasma membrane	33.04	36.39
TraesCS7B01G101400.1	Wheat	plasma membrane	33.04	36.39
Os06t0238900-01	Rice	extracellular, plasma membrane	32.44	35.28
HORVU7Hr1G039900.1	Barley	extracellular, mitochondrion, plastid	33.04	32.74
PGSC0003DMT400082049	Potato	extracellular, plasma membrane	21.13	22.4
PGSC0003DMT400079341	Potato	extracellular, plasma membrane	17.86	21.9
PGSC0003DMT400048713	Potato	extracellular, plasma membrane, vacuole	19.94	21.41
PGSC0003DMT400015915	Potato	extracellular, plasma membrane	14.88	17.06

Protein Annotations

EnsemblPlants:PGSC0003DMT400003263	EnsemblPlantsGene:PGSC0003DMG400001293	EntrezGene:102605895	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:DUF716_TMEM45	PANTHER:PTHR16007	PANTHER:PTHR16007:SF9	PFAM:PF04819	PGSC:PGSC0003DMG400001293	RefSeq:XP_006338516.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI000294D37E	UniProt:M0ZLC0	MapMan:35.2	:

Description

MRNA, 1290 bp sequence [Source:PGSC_GENE;Acc:PGSC0003DMG400001293]

Coordinates

chr2:-:46714721..46716193

Molecular Weight (calculated)

37530.3 Da

IEP (calculated)

5.983

GRAVY (calculated)

0.121

Length

336 amino acids

Sequence
(BLAST)

001: MGLFGYTVAG GGFILIGAWE SLVSSSGALK TSSPSSTTQS PPQNPYTDKN EQDSVFSSSI TFVLILILSF LFVLDSLLSF FDALNSKDNI GSVLQLQVIA
101: ISLLFFLYSV LGLMTRLKKS FDLPSPILNL LCLFAFAEEF VLFYLQRKDP SGVENRYYDL LLVPIAICAF CSFLELKNPK SNYTRLGRGI GLILQGMWTL
201: QMGFAFFSDL ITQGCYLHER SRGNYTVKCK GHPQYHRGGA IATLQFNCHL ALLVAVVTFV YSIVCKNHGI GREHMRYRPI GAEMQHLEID SQAHFTLESD
301: EEDDNENGIK EEMNVEMQKA IVPVPESETN GYHTHP

Best Arabidopsis Sequence Match ( AT3G01360.2 )
(BLAST)

001: MGILSYAVAG GGFAVIGAWE SLDSSNLDPN SSSGTADSSS PMAQIRASPP KSVGSSSIPV ALLSSLFIAN SFFSFFSSIG SRDRVGSMIQ LQIVAVAVLF
101: LYYAILTYLV NSKNAVFVAL PSSITTLLLL FGFIEEFLMF YLQKKDVSGI ENRYYDLMLV PIAICVFSTV FELKSDSSTH RFAKLGRGIG LILQGTWFLQ
201: MGVSFFTGLI TNNCTFHEKS RGNFTIKCKG HGDYHRAKAI ATLQFNCHLA LMVVVATGLF SVIANKNGYL RQDHSKYRPL GAELENLSTF TLDSDEEDEV
301: REESNVAKEV GLNGNSSHD

Arabidopsis Description

At3g01360 [Source:UniProtKB/TrEMBL;Acc:Q9SRI3]
SUBAcon: [plasma membrane,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.