CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plastid 2
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 4
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37527	Canola	endoplasmic reticulum, extracellular, plasma membrane, plastid	92.38	92.38
Bra039124.1-P	Field mustard	plasma membrane	92.06	92.06
AT3G01360.1	Thale cress	extracellular, plasma membrane, plastid	85.71	84.64
VIT_14s0066g01930.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	51.43	50.94
Solyc02g087260.1.1	Tomato	plasma membrane	51.11	47.92
PGSC0003DMT400003263	Potato	plasma membrane	50.79	47.62
GSMUA_Achr8P20200_001	Banana	plasma membrane	40.32	40.58
OQU76145	Sorghum	extracellular, plasma membrane, plastid	34.92	36.54
TraesCS7D01G197200.1	Wheat	extracellular, plasma membrane	35.24	36.39
TraesCS7B01G101400.1	Wheat	plasma membrane	34.92	36.07
TraesCS7A01G195700.1	Wheat	plasma membrane	34.92	36.07
Zm00001d037263_P001	Maize	plasma membrane	33.65	35.22
Os06t0238900-01	Rice	extracellular, plasma membrane	34.29	34.95
HORVU7Hr1G039900.1	Barley	extracellular, mitochondrion, plastid	34.29	31.86
CDY35545	Canola	extracellular, plasma membrane	16.19	19.62
CDY29937	Canola	plasma membrane	16.19	19.32
CDY08230	Canola	plasma membrane	17.14	18.88
CDY16500	Canola	plasma membrane	17.14	18.06
CDX77245	Canola	plasma membrane	16.83	17.73
CDY10579	Canola	plasma membrane	15.87	17.3
CDY65755	Canola	endoplasmic reticulum, extracellular, plasma membrane	15.56	16.95
CDY10576	Canola	endoplasmic reticulum, extracellular, plasma membrane	15.56	16.95
CDY26121	Canola	extracellular, plasma membrane, vacuole	16.83	16.77
CDY42309	Canola	plasma membrane	15.87	16.56
CDY44949	Canola	extracellular, plasma membrane	15.87	16.56
CDY65753	Canola	plasma membrane	15.87	16.39
CDY10580	Canola	endoplasmic reticulum, plasma membrane, vacuole	14.92	15.77

Protein Annotations

EnsemblPlants:CDY49048	EnsemblPlantsGene:GSBRNA2T00092267001	GO:A0A078IJ00	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:DUF716_TMEM45	PANTHER:PTHR16007	PANTHER:PTHR16007:SF9	PFAM:PF04819	ProteinID:CDY49048	ProteinID:CDY49048.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EECFCB	UniProt:A0A078IJ00	MapMan:35.2	:

Description

BnaC05g48760DBnaC05g48760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IJ00]

Coordinates

chrLK032808:-:30380..31383

Molecular Weight (calculated)

33899.9 Da

IEP (calculated)

7.217

GRAVY (calculated)

0.266

Length

315 amino acids

Sequence
(BLAST)

001: MGILSYAVAG GGFAVIGAWE SLDSSNLDPN PSTGTAPSSP MTAQITPSPP KSVGSSSVPV ALLSSLFIAN SIYSFFSSIG SSDRVGSMLQ LQMLAVAALF
101: LVYAVVTHLV NSKNGGFAAL PSSITSLLLL FGFIEEFLMF YLQKKDTSGI ENRYYDLMLV PIAVCVFSTV FELKSDATTH RFAKLGRGIG LILQGTWFLQ
201: MGISFFTGLI TNNCSCHEKS RGNFTIKCKG HGDYHRAKAI ATLQFNCHLA LMVVLATALF SVVANKKGYL REDHSKYRPL GAEMENLSNF TLDSDEEDSN
301: VAKETALNGI ITSHA

Best Arabidopsis Sequence Match ( AT3G01360.2 )
(BLAST)

001: MGILSYAVAG GGFAVIGAWE SLDSSNLDPN SSSGTADSSS PMAQIRASPP KSVGSSSIPV ALLSSLFIAN SFFSFFSSIG SRDRVGSMIQ LQIVAVAVLF
101: LYYAILTYLV NSKNAVFVAL PSSITTLLLL FGFIEEFLMF YLQKKDVSGI ENRYYDLMLV PIAICVFSTV FELKSDSSTH RFAKLGRGIG LILQGTWFLQ
201: MGVSFFTGLI TNNCTFHEKS RGNFTIKCKG HGDYHRAKAI ATLQFNCHLA LMVVVATGLF SVIANKNGYL RQDHSKYRPL GAELENLSTF TLDSDEEDEV
301: REESNVAKEV GLNGNSSHD

Arabidopsis Description

At3g01360 [Source:UniProtKB/TrEMBL;Acc:Q9SRI3]
SUBAcon: [plasma membrane,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.