Factsheet for VIT_03s0063g01730.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24549	Soybean	plasma membrane	50.67	64.07
KRH29555	Soybean	extracellular, plasma membrane	49.6	62.5
CDX77245	Canola	plasma membrane	45.04	56.19
CDY16500	Canola	plasma membrane	44.77	55.85
Bra014190.1-P	Field mustard	plasma membrane	44.5	55.52
Solyc10g050430.1.1	Tomato	extracellular, plasma membrane	42.9	54.61
AT1G49470.1	Thale cress	plasma membrane	43.7	53.97
PGSC0003DMT400015915	Potato	extracellular, plasma membrane	42.36	53.92
GSMUA_Achr7P12360_001	Banana	plasma membrane	39.95	50.85
Os08t0462900-01	Rice	extracellular, plasma membrane	37.0	44.81
OQU80610	Sorghum	plasma membrane	35.66	38.44
VIT_02s0087g00750.t01	Wine grape	extracellular, plasma membrane	27.08	33.01
VIT_06s0004g00960.t01	Wine grape	extracellular, plasma membrane, vacuole	26.27	32.03
VIT_02s0033g00020.t01	Wine grape	endoplasmic reticulum, extracellular	8.04	28.85
VIT_02s0033g00010.t01	Wine grape	extracellular, plasma membrane	9.65	22.5
VIT_06s0009g01520.t01	Wine grape	endoplasmic reticulum, plasma membrane, plastid	6.97	21.67
VIT_03s0063g02210.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, mitochondrion	4.83	20.0
VIT_14s0066g01930.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	12.33	14.47

Protein Annotations

MapMan:35.2	EMBL:AM443139	ProteinID:CAN63047	ProteinID:CAN63047.1	ProteinID:CCB56934	ProteinID:CCB56934.1
InterPro:DUF716_TMEM45	UniProt:F6HQH7	EMBL:FN596006	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PFAM:PF04819	PANTHER:PTHR16007	PANTHER:PTHR16007:SF14	TMHMM:TMhelix	UniParc:UPI0002109120	ArrayExpress:VIT_03s0063g01730
EnsemblPlantsGene:VIT_03s0063g01730	EnsemblPlants:VIT_03s0063g01730.t01	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3:-:5052856..5062669

Molecular Weight (calculated)

41317.5 Da

IEP (calculated)

10.002

GRAVY (calculated)

0.387

Length

373 amino acids

Sequence
(BLAST)

001: MWRSKTWSGT RSFKPSPTHA RAETSFRLPR MSSEWAKRSL VALAVLSSSP SSTTWKTSLA VRIPIRRRVS SLRNSSRLLL PKNSGHLVPG LALTLLGLWH
101: TINTIRAYAL KGSTNFTVKF WYPFNSPFPN LKYLELIFIL FFSIFAIFMQ VLDFPFIRLS FELDNFEHAS MFLHLAIFAG FTLSAELTHS LEGLSGVSGI
201: LAASVFGQEL FLLHFHSTDH VGLEGHYHWL LQLIVLVSLV AALAATSFPT SFPAALVLST AVVFQGCWFM NMGFMLWVPE FVPKGCKVQL TSSSDSMHGA
301: VACGSHDADL RARALANMQF SWILSGILMF VGSLCLKLVG KCSSKAGFIE YEQLHSGVPN VPIAIDGFKE AQT

Best Arabidopsis Sequence Match ( AT1G49470.1 )
(BLAST)

001: MGTFLGHFVP GLSLALLGLW HLFNTIRSYC LKGPEAFSAK FWFPFPKLKH LELILILFFS FLSITLLTLD FPNFNFSSLK PDNLEHASMF LHLIIFACFA
101: LFCELTLCSD LFSGLIGVLS ASVFAQELFL LHFHSTDHSG LEGHYHFLLQ LIAFVSFSSA LASASFPKSF SAALFLPISV MFQGCWFLNM GFMLWIPEYV
201: PRGCVSNMST STDNNRRSVY HSGAVACESP GAEIRAKALA NLQFSWMLSA ILIITCALCL KYSGKVVLPK IRSSLEYERL CRQGSDRSAT VTVEAPASSD
301: QQ

Arabidopsis Description

At1g49470 [Source:UniProtKB/TrEMBL;Acc:Q9XIB3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.