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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, extracellular

Predictor Summary:
  • plastid 2
  • extracellular 4
  • endoplasmic reticulum 3
  • vacuole 3
  • plasma membrane 5
  • golgi 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, plasma membrane
Any Predictor:mitochondrion, plastid, secretory
BaCelLo:plastid
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400015915 Potato extracellular, plasma membrane 92.83 92.83
KRH24549 Soybean plasma membrane 52.56 52.2
KRH29555 Soybean extracellular, plasma membrane 50.85 50.34
CDX77245 Canola plasma membrane 48.12 47.16
GSMUA_Achr7P12360_001 Banana plasma membrane 46.76 46.76
Bra014190.1-P Field mustard plasma membrane 47.44 46.49
CDY16500 Canola plasma membrane 47.44 46.49
AT1G49470.1 Thale cress plasma membrane 47.44 46.03
Os08t0462900-01 Rice extracellular, plasma membrane 45.39 43.18
VIT_03s0063g01730.t01 Wine grape mitochondrion 54.61 42.9
OQU80610 Sorghum plasma membrane 46.08 39.02
Solyc04g014520.1.1 Tomato plasma membrane 33.45 33.0
Solyc01g006050.2.1 Tomato extracellular, golgi, plasma membrane 34.13 31.65
Solyc01g017600.2.1 Tomato extracellular, plasma membrane, vacuole 33.11 31.09
Solyc01g006070.2.1 Tomato extracellular, plasma membrane 31.4 29.87
Solyc08g075970.2.1 Tomato extracellular, plasma membrane 27.65 29.56
Solyc02g087260.1.1 Tomato plasma membrane 16.72 14.58
Protein Annotations
EnsemblPlants:Solyc10g050430.1.1EnsemblPlantsGene:Solyc10g050430.1GO:GO:0005575GO:GO:0016020GO:GO:0016021InterPro:DUF716_TMEM45
PANTHER:PTHR16007PANTHER:PTHR16007:SF14PFAM:PF04819SEG:segTMHMM:TMhelixUniParc:UPI000276A3BD
UniProt:K4D0J9MapMan:35.2::::
Description
No Description!
Coordinates
chr10:+:49752323..49753204
Molecular Weight (calculated)
32824.5 Da
IEP (calculated)
7.464
GRAVY (calculated)
0.571
Length
293 amino acids
Sequence
(BLAST)
001: MGTFLGHLVP GLALALLGFW HTISTIRANY HNGTTKFKSR FWYPFKATPF PTLQHIDLIL VLSFSLFCIV IQFIDLPSLH LSLKLHNIEH ATMFLHLTVF
101: AGFTLLAEIS NLHEILHGIL GILAMSIFGQ ELFLLHYHST DHVGLEGHYH WLLQLVVCIA LISAVVVTCF PSCFPAALVL SISVIFQGVW FMNMGFSLWF
201: PHFVPQGCVM QSSEGPENSS VHGAIMCQTD EADTRARAMA NLQFSWVIAA ILILVSGISL MFAKNRADRT LLSKYEQLQN RGRDNPVTIN CLK
Best Arabidopsis Sequence Match ( AT1G49470.1 )
(BLAST)
001: MGTFLGHFVP GLSLALLGLW HLFNTIRSYC LKGPEAFSAK FWFPFPKLKH LELILILFFS FLSITLLTLD FPNFNFSSLK PDNLEHASMF LHLIIFACFA
101: LFCELTLCSD LFSGLIGVLS ASVFAQELFL LHFHSTDHSG LEGHYHFLLQ LIAFVSFSSA LASASFPKSF SAALFLPISV MFQGCWFLNM GFMLWIPEYV
201: PRGCVSNMST STDNNRRSVY HSGAVACESP GAEIRAKALA NLQFSWMLSA ILIITCALCL KYSGKVVLPK IRSSLEYERL CRQGSDRSAT VTVEAPASSD
301: QQ
Arabidopsis Description
At1g49470 [Source:UniProtKB/TrEMBL;Acc:Q9XIB3]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.