Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 6
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44949 | Canola | extracellular, plasma membrane | 92.03 | 84.11 |
| Bra020070.1-P | Field mustard | extracellular, plasma membrane | 91.67 | 83.77 |
| CDY42309 | Canola | plasma membrane | 91.67 | 83.77 |
| AT1G55230.1 | Thale cress | plasma membrane | 62.68 | 57.67 |
| VIT_02s0087g00750.t01 | Wine grape | extracellular, plasma membrane | 60.14 | 54.25 |
| KRH20920 | Soybean | plasma membrane | 59.42 | 53.25 |
| Solyc04g014520.1.1 | Tomato | plasma membrane | 57.25 | 53.2 |
| KRH51013 | Soybean | extracellular, plasma membrane | 59.42 | 52.56 |
| VIT_06s0004g00960.t01 | Wine grape | extracellular, plasma membrane, vacuole | 57.61 | 51.96 |
| KRH51014 | Soybean | extracellular, plasma membrane | 57.97 | 51.78 |
| Solyc01g006050.2.1 | Tomato | extracellular, golgi, plasma membrane | 58.7 | 51.27 |
| AT1G55240.1 | Thale cress | plasma membrane | 57.61 | 51.13 |
| PGSC0003DMT400082049 | Potato | extracellular, plasma membrane | 58.7 | 51.1 |
| KRH02131 | Soybean | plasma membrane | 38.04 | 50.97 |
| GSMUA_Achr5P23140_001 | Banana | endoplasmic reticulum, extracellular, plasma membrane | 57.61 | 50.96 |
| GSMUA_Achr7P18580_001 | Banana | extracellular, plasma membrane, vacuole | 49.28 | 49.82 |
| GSMUA_Achr10P... | Banana | extracellular, plasma membrane | 48.19 | 49.63 |
| Solyc01g017600.2.1 | Tomato | extracellular, plasma membrane, vacuole | 55.43 | 49.04 |
| GSMUA_Achr3P07810_001 | Banana | extracellular, plasma membrane | 55.07 | 48.87 |
| KRH11368 | Soybean | extracellular | 13.77 | 48.72 |
| PGSC0003DMT400048713 | Potato | extracellular, plasma membrane, vacuole | 55.07 | 48.56 |
| KRH36022 | Soybean | plasma membrane | 53.26 | 48.36 |
| KRH65232 | Soybean | plasma membrane | 52.17 | 48.16 |
| KRG90737 | Soybean | plasma membrane | 53.62 | 47.74 |
| TraesCS5A01G231300.1 | Wheat | plasma membrane | 52.54 | 45.89 |
| TraesCS5A01G231100.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 52.54 | 45.74 |
| TraesCS5B01G229600.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 52.17 | 45.43 |
| Zm00001d020652_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 52.17 | 45.28 |
| HORVU5Hr1G066720.1 | Barley | endoplasmic reticulum | 53.26 | 45.23 |
| EER98986 | Sorghum | endoplasmic reticulum, plasma membrane | 50.36 | 45.13 |
| Os08t0462800-01 | Rice | extracellular, plasma membrane | 51.45 | 45.08 |
| EER98987 | Sorghum | endoplasmic reticulum, plasma membrane | 51.45 | 44.38 |
| TraesCS5D01G236600.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 51.09 | 44.34 |
| TraesCS3A01G084100.1 | Wheat | plasma membrane | 49.64 | 43.49 |
| OQU80608 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 50.0 | 43.4 |
| Solyc01g006070.2.1 | Tomato | extracellular, plasma membrane | 48.19 | 43.18 |
| Zm00001d020651_P001 | Maize | plasma membrane | 47.46 | 42.53 |
| TraesCS5A01G231200.1 | Wheat | plasma membrane | 47.46 | 41.59 |
| Os09t0444900-01 | Rice | peroxisome, plasma membrane | 52.54 | 41.55 |
| TraesCS5B01G229500.1 | Wheat | plasma membrane | 47.1 | 41.27 |
| Zm00001d035422_P001 | Maize | extracellular | 27.54 | 41.08 |
| TraesCS5D01G236700.1 | Wheat | plasma membrane | 46.74 | 40.95 |
| Os09t0444800-01 | Rice | mitochondrion, plasma membrane, plastid | 46.01 | 40.32 |
| HORVU5Hr1G066680.1 | Barley | extracellular, plasma membrane | 46.38 | 40.25 |
| EER98982 | Sorghum | cytosol, peroxisome, plasma membrane | 47.1 | 36.93 |
| OQU93027 | Sorghum | extracellular | 19.57 | 34.39 |
| AT1G49470.1 | Thale cress | plasma membrane | 36.59 | 33.44 |
| OQU84010 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 38.41 | 32.72 |
| HORVU5Hr1G066700.1 | Barley | plastid | 26.81 | 28.68 |
| AT1G32127.1 | Thale cress | plasma membrane | 27.17 | 28.41 |
| Zm00001d048662_P001 | Maize | plasma membrane | 33.33 | 27.06 |
| KXG29783 | Sorghum | extracellular, plasma membrane | 27.54 | 25.08 |
| AT3G01360.1 | Thale cress | extracellular, plasma membrane, plastid | 16.3 | 14.11 |
Protein Annotations
| MapMan:35.2 | EntrezGene:832108 | UniProt:A0A178UDP9 | ProteinID:AED92759.1 | ArrayExpress:AT5G19870 | EnsemblPlantsGene:AT5G19870 |
| RefSeq:AT5G19870 | TAIR:AT5G19870 | RefSeq:AT5G19870-TAIR-G | EnsemblPlants:AT5G19870.1 | TAIR:AT5G19870.1 | Unigene:At.31244 |
| EMBL:BT015328 | EMBL:BT015639 | InterPro:DUF716_TMEM45 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| RefSeq:NP_197487.1 | ProteinID:OAO90821.1 | PFAM:PF04819 | PO:PO:0000230 | PO:PO:0001054 | PO:PO:0007115 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009046 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025281 | PANTHER:PTHR16007 |
| PANTHER:PTHR16007:SF27 | UniProt:Q66GS4 | TMHMM:TMhelix | UniParc:UPI000016251E | SEG:seg | : |
Description
At5g19870 [Source:UniProtKB/TrEMBL;Acc:Q66GS4]
Coordinates
chr5:-:6715965..6717110
Molecular Weight (calculated)
31639.0 Da
IEP (calculated)
8.634
GRAVY (calculated)
0.554
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTLVGHILP GFFFFALGLW HLFNHIKIFS LHPKSYIAPL WFPLSKPRYL EPLVIIIASS LSISVELFLG QKNHQPFDPN DGTIPSNHLH NFEHSCISFT
101: FITYAAFAIV FDKTRPIAHR SLINLIAALA FAQQLFLFHF HSSDHTGVEG HYHLLLQLVV FVSLVTTLLG IALPSSFILS FVRSLSVSFQ GIWLMSMACM
201: LWTPSLVPKD CFLHIEEGKH TIRCSDVKAL HRAISLVNIQ FSWFLVIITI FAMWFYIFLQ RIYGEKIEYS QLRTKD
101: FITYAAFAIV FDKTRPIAHR SLINLIAALA FAQQLFLFHF HSSDHTGVEG HYHLLLQLVV FVSLVTTLLG IALPSSFILS FVRSLSVSFQ GIWLMSMACM
201: LWTPSLVPKD CFLHIEEGKH TIRCSDVKAL HRAISLVNIQ FSWFLVIITI FAMWFYIFLQ RIYGEKIEYS QLRTKD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.