Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G44670.1 | CDX85250 | AT3G29160.1 | 21798944 |
| AT2G44670.1 | CDX86386 | AT3G29160.1 | 21798944 |
| AT2G44670.1 | CDY04058 | AT3G29160.1 | 21798944 |
| AT2G44670.1 | CDY44405 | AT3G29160.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004855.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| CDY48248 | Canola | nucleus | 96.7 | 96.7 |
| CDX95609 | Canola | cytosol, mitochondrion, nucleus | 89.01 | 86.17 |
| CDX83422 | Canola | nucleus | 87.91 | 85.11 |
| CDY30481 | Canola | nucleus | 86.81 | 84.04 |
| CDY23451 | Canola | nucleus | 86.81 | 84.04 |
| AT2G44670.1 | Thale cress | cytosol, nucleus, plastid | 83.52 | 81.72 |
| CDX71827 | Canola | cytosol, nucleus, plastid | 60.44 | 62.5 |
| CDY41184 | Canola | cytosol | 60.44 | 62.5 |
| VIT_15s0021g00940.t01 | Wine grape | nucleus | 59.34 | 53.47 |
| KRH66418 | Soybean | plastid | 61.54 | 48.7 |
| KRH48855 | Soybean | nucleus, plastid | 61.54 | 48.7 |
| PGSC0003DMT400004241 | Potato | cytosol | 50.55 | 46.46 |
| Solyc01g088660.2.1 | Tomato | cytosol, mitochondrion, nucleus | 49.45 | 45.45 |
| GSMUA_Achr5P12630_001 | Banana | cytosol | 45.05 | 44.09 |
| CDY38416 | Canola | nucleus | 47.25 | 34.13 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 49.45 | 32.37 |
| CDX78788 | Canola | nucleus | 49.45 | 29.61 |
| HORVU2Hr1G104960.1 | Barley | cytosol, nucleus, plastid | 37.36 | 27.64 |
| TraesCS2A01G454800.1 | Wheat | cytosol, nucleus, plastid | 37.36 | 27.64 |
| TraesCS2B01G476700.1 | Wheat | cytosol, nucleus, plastid | 37.36 | 27.64 |
| TraesCS2D01G455000.1 | Wheat | cytosol, nucleus, plastid | 37.36 | 27.64 |
| Os04t0586000-00 | Rice | nucleus | 37.36 | 26.77 |
| Zm00001d002523_P001 | Maize | nucleus | 37.36 | 26.56 |
| EES12738 | Sorghum | cytosol, nucleus, plastid | 37.36 | 26.36 |
| CDY40586 | Canola | nucleus | 45.05 | 25.95 |
| CDY09610 | Canola | nucleus | 47.25 | 25.6 |
| CDX90460 | Canola | nucleus | 47.25 | 25.44 |
| Zm00001d051492_P001 | Maize | cytosol | 32.97 | 24.19 |
| CDY72627 | Canola | cytosol, nucleus | 45.05 | 24.12 |
| EES05711 | Sorghum | cytosol | 34.07 | 23.85 |
| TraesCS6B01G289300.1 | Wheat | nucleus | 32.97 | 23.81 |
| TraesCS6A01G262000.1 | Wheat | nucleus | 31.87 | 23.02 |
| TraesCS6D01G242700.1 | Wheat | nucleus | 31.87 | 23.02 |
| CDY12406 | Canola | nucleus | 45.05 | 22.53 |
| CDX77736 | Canola | nucleus | 45.05 | 22.28 |
| CDY33512 | Canola | nucleus | 43.96 | 21.86 |
| GSMUA_Achr2P10380_001 | Banana | cytosol | 57.14 | 20.88 |
| CDY43446 | Canola | nucleus | 38.46 | 20.0 |
| HORVU6Hr1G066610.2 | Barley | cytosol, nucleus | 31.87 | 19.73 |
Protein Annotations
| EnsemblPlants:CDX74676 | EnsemblPlantsGene:GSBRNA2T00116628001 | InterPro:IPR007650 | InterPro:Zf-FLZ_dom | PANTHER:PTHR33059 | PANTHER:PTHR33059:SF73 |
| PFAM:PF04570 | PFscan:PS51795 | ProteinID:CDX74676 | ProteinID:CDX74676.1 | UniParc:UPI0002547E24 | MapMan:27.3.3 |
Description
BnaA05g04220D
Coordinates
chrLK031802:+:126306..127060
Molecular Weight (calculated)
10277.1 Da
IEP (calculated)
8.208
GRAVY (calculated)
-0.678
Length
91 amino acids
Sequence
(BLAST)
(BLAST)
1: MASYYAGVFG SEEPHFLESC SLCRKHLGRN SDIFMYRGDK AFCSNECREE QIESDEAKEK SWKVSARSLR KKSSEAAKDC KTVRTGTLVV A
1: MASYYSGFLG CEEPHFLESC SLCRKHLGLN SDIFMYRGDK AFCSNECREE QIESDEAKER KWKKSSRSLR KNSSETKESA AGNTVRTGTL VVA
Arabidopsis Description
At2g44670/F16B22.16 [Source:UniProtKB/TrEMBL;Acc:O80506]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.