Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_14s0108g01230.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G44670.1 | VIT_14s0108g01230.t01 | AT3G29160.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH48855 | Soybean | nucleus, plastid | 71.29 | 62.61 |
| KRH66418 | Soybean | plastid | 69.31 | 60.87 |
| Bra004855.1-P | Field mustard | cytosol | 53.47 | 59.34 |
| CDX74676 | Canola | cytosol | 53.47 | 59.34 |
| CDX95609 | Canola | cytosol, mitochondrion, nucleus | 52.48 | 56.38 |
| CDY48248 | Canola | nucleus | 50.49 | 56.04 |
| PGSC0003DMT400004241 | Potato | cytosol | 54.46 | 55.56 |
| Solyc01g088660.2.1 | Tomato | cytosol, mitochondrion, nucleus | 54.46 | 55.56 |
| Bra000358.1-P | Field mustard | nucleus | 51.49 | 55.32 |
| CDX83422 | Canola | nucleus | 51.49 | 55.32 |
| CDY23451 | Canola | nucleus | 50.49 | 54.26 |
| CDY30481 | Canola | nucleus | 50.49 | 54.26 |
| Bra037639.1-P | Field mustard | nucleus | 50.49 | 54.26 |
| AT2G44670.1 | Thale cress | cytosol, nucleus, plastid | 49.51 | 53.76 |
| CDY41184 | Canola | cytosol | 46.53 | 53.41 |
| Bra007517.1-P | Field mustard | cytosol | 46.53 | 53.41 |
| CDX71827 | Canola | cytosol, nucleus, plastid | 45.54 | 52.27 |
| GSMUA_Achr5P12630_001 | Banana | cytosol | 43.56 | 47.31 |
| VIT_02s0012g00280.t01 | Wine grape | nucleus | 59.41 | 38.22 |
| HORVU2Hr1G104960.1 | Barley | cytosol, nucleus, plastid | 43.56 | 35.77 |
| TraesCS2B01G476700.1 | Wheat | cytosol, nucleus, plastid | 42.57 | 34.96 |
| TraesCS2D01G455000.1 | Wheat | cytosol, nucleus, plastid | 42.57 | 34.96 |
| TraesCS2A01G454800.1 | Wheat | cytosol, nucleus, plastid | 41.58 | 34.15 |
| Os04t0586000-00 | Rice | nucleus | 41.58 | 33.07 |
| Zm00001d002523_P001 | Maize | nucleus | 40.59 | 32.03 |
| EES12738 | Sorghum | cytosol, nucleus, plastid | 39.6 | 31.01 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 42.57 | 30.94 |
| Zm00001d051492_P001 | Maize | cytosol | 34.65 | 28.23 |
| TraesCS6B01G289300.1 | Wheat | nucleus | 33.66 | 26.98 |
| TraesCS6D01G242700.1 | Wheat | nucleus | 33.66 | 26.98 |
| EES05711 | Sorghum | cytosol | 34.65 | 26.92 |
| TraesCS6A01G262000.1 | Wheat | nucleus | 32.67 | 26.19 |
| HORVU6Hr1G066610.2 | Barley | cytosol, nucleus | 31.68 | 21.77 |
| GSMUA_Achr2P10380_001 | Banana | cytosol | 51.49 | 20.88 |
Protein Annotations
| EntrezGene:100264994 | wikigene:100264994 | MapMan:27.3.3 | ProteinID:CCB43921 | ProteinID:CCB43921.1 | UniProt:F6GVD8 |
| EMBL:FN594952 | InterPro:IPR007650 | EntrezGene:LOC100264994 | wikigene:LOC100264994 | PFAM:PF04570 | PFscan:PS51795 |
| PANTHER:PTHR33059 | PANTHER:PTHR33059:SF73 | TIGR:TC61870 | TIGR:TC67037 | UniParc:UPI00015C955C | ArrayExpress:VIT_15s0021g00940 |
| EnsemblPlantsGene:VIT_15s0021g00940 | EnsemblPlants:VIT_15s0021g00940.t01 | unigene:Vvi.2044 | RefSeq:XP_002268179 | RefSeq:XP_002268179.1 | RefSeq:XP_003633898 |
| RefSeq:XP_003633898.1 | InterPro:Zf-FLZ_dom | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr15:-:10850781..10852074
Molecular Weight (calculated)
11326.2 Da
IEP (calculated)
8.206
GRAVY (calculated)
-0.728
Length
101 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASSSSSPR SGLLYYAGCE EYPHQPHFLE ACFLCQKPLG NNADIFMYRG NTPFCSKECR QEQMEFDEAK EKSWNMRSLR KSDSNKSSSN KAVRSGTVAV
101: A
101: A
001: MELSSRKPYF IEEEEEENLA SSLSEMEAGF SGNNNNSNNH GNPQNGVVSS SRFSYGRLNS LRNSQSYYYN QYSVSSPRSV VSGRFHDFRF DIQQPHFLDS
101: CFLCKKPLGD NRDIYMYRGD TPFCSEECRQ EQIERDEAKE KKQNLSHSVK SAMRRKEQSS PTRSRDYAFH NGTVAAA
101: CFLCKKPLGD NRDIYMYRGD TPFCSEECRQ EQIERDEAKE KKQNLSHSVK SAMRRKEQSS PTRSRDYAFH NGTVAAA
Arabidopsis Description
Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q9FGQ9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.