Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G44670.1 | CDX85250 | AT3G29160.1 | 21798944 |
| AT2G44670.1 | CDX86386 | AT3G29160.1 | 21798944 |
| AT2G44670.1 | CDY04058 | AT3G29160.1 | 21798944 |
| AT2G44670.1 | CDY44405 | AT3G29160.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83422 | Canola | nucleus | 96.81 | 96.81 |
| CDY30481 | Canola | nucleus | 89.36 | 89.36 |
| CDY23451 | Canola | nucleus | 89.36 | 89.36 |
| CDX74676 | Canola | cytosol | 86.17 | 89.01 |
| CDY48248 | Canola | nucleus | 84.04 | 86.81 |
| AT2G44670.1 | Thale cress | cytosol, nucleus, plastid | 84.04 | 84.95 |
| CDX71827 | Canola | cytosol, nucleus, plastid | 61.7 | 65.91 |
| CDY41184 | Canola | cytosol | 61.7 | 65.91 |
| VIT_15s0021g00940.t01 | Wine grape | nucleus | 56.38 | 52.48 |
| PGSC0003DMT400004241 | Potato | cytosol | 52.13 | 49.49 |
| KRH66418 | Soybean | plastid | 58.51 | 47.83 |
| KRH48855 | Soybean | nucleus, plastid | 58.51 | 47.83 |
| Solyc01g088660.2.1 | Tomato | cytosol, mitochondrion, nucleus | 50.0 | 47.47 |
| GSMUA_Achr5P12630_001 | Banana | cytosol | 43.62 | 44.09 |
| CDY38416 | Canola | nucleus | 48.94 | 36.51 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 51.06 | 34.53 |
| CDX78788 | Canola | nucleus | 50.0 | 30.92 |
| CDY40586 | Canola | nucleus | 46.81 | 27.85 |
| CDY09610 | Canola | nucleus | 48.94 | 27.38 |
| CDX90460 | Canola | nucleus | 48.94 | 27.22 |
| TraesCS2B01G476700.1 | Wheat | cytosol, nucleus, plastid | 35.11 | 26.83 |
| TraesCS2A01G454800.1 | Wheat | cytosol, nucleus, plastid | 35.11 | 26.83 |
| TraesCS2D01G455000.1 | Wheat | cytosol, nucleus, plastid | 35.11 | 26.83 |
| HORVU2Hr1G104960.1 | Barley | cytosol, nucleus, plastid | 35.11 | 26.83 |
| EES05711 | Sorghum | cytosol | 36.17 | 26.15 |
| Os04t0586000-00 | Rice | nucleus | 35.11 | 25.98 |
| Zm00001d002523_P001 | Maize | nucleus | 35.11 | 25.78 |
| EES12738 | Sorghum | cytosol, nucleus, plastid | 35.11 | 25.58 |
| CDY72627 | Canola | cytosol, nucleus | 45.74 | 25.29 |
| Zm00001d051492_P001 | Maize | cytosol | 31.91 | 24.19 |
| CDY12406 | Canola | nucleus | 46.81 | 24.18 |
| CDX77736 | Canola | nucleus | 46.81 | 23.91 |
| TraesCS6B01G289300.1 | Wheat | nucleus | 31.91 | 23.81 |
| CDY33512 | Canola | nucleus | 45.74 | 23.5 |
| TraesCS6A01G262000.1 | Wheat | nucleus | 30.85 | 23.02 |
| TraesCS6D01G242700.1 | Wheat | nucleus | 30.85 | 23.02 |
| CDY43446 | Canola | nucleus | 39.36 | 21.14 |
| GSMUA_Achr2P10380_001 | Banana | cytosol | 53.19 | 20.08 |
| HORVU6Hr1G066610.2 | Barley | cytosol, nucleus | 30.85 | 19.73 |
Protein Annotations
| EnsemblPlants:CDX95609 | EnsemblPlantsGene:GSBRNA2T00101480001 | InterPro:IPR007650 | InterPro:Zf-FLZ_dom | PANTHER:PTHR33059 | PANTHER:PTHR33059:SF73 |
| PFAM:PF04570 | PFscan:PS51795 | ProteinID:CDX95609 | ProteinID:CDX95609.1 | SEG:seg | UniParc:UPI0004EDD9C8 |
| MapMan:27.3.3 | : | : | : | : | : |
Description
BnaC03g24900D
Coordinates
chrLK031890:+:221890..222579
Molecular Weight (calculated)
10439.1 Da
IEP (calculated)
6.502
GRAVY (calculated)
-0.583
Length
94 amino acids
Sequence
(BLAST)
(BLAST)
1: MASYYSAFFG SEEPHFLESC SLCSKHLGPN SDIFMYRGDT AFCSQECREE QIESDEAKER SWKLSARSLR KKSSEAAKDS AAGKTVRTGT LVVA
1: MASYYSGFLG CEEPHFLESC SLCRKHLGLN SDIFMYRGDK AFCSNECREE QIESDEAKER KWKKSSRSLR KNSSETKESA AGNTVRTGTL VVA
Arabidopsis Description
At2g44670/F16B22.16 [Source:UniProtKB/TrEMBL;Acc:O80506]
SUBAcon: [cytosol,nucleus,plastid]
SUBAcon: [cytosol,nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.