CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH01228
KRH18445
KRH44934

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44670.1	KRH01228	AT3G29160.1	21798944
AT2G44670.1	KRH18445	AT3G29160.1	21798944
AT2G44670.1	KRH44934	AT3G29160.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48855	Soybean	nucleus, plastid	96.52	96.52
VIT_15s0021g00940.t01	Wine grape	nucleus	60.87	69.31
Bra004855.1-P	Field mustard	cytosol	48.7	61.54
CDX74676	Canola	cytosol	48.7	61.54
CDX95609	Canola	cytosol, mitochondrion, nucleus	47.83	58.51
CDY48248	Canola	nucleus	46.09	58.24
Bra000358.1-P	Field mustard	nucleus	46.96	57.45
CDY23451	Canola	nucleus	46.96	57.45
CDX83422	Canola	nucleus	46.96	57.45
AT2G44670.1	Thale cress	cytosol, nucleus, plastid	46.09	56.99
CDY30481	Canola	nucleus	46.09	56.38
Bra037639.1-P	Field mustard	nucleus	46.09	56.38
CDY41184	Canola	cytosol	41.74	54.55
Bra007517.1-P	Field mustard	cytosol	41.74	54.55
CDX71827	Canola	cytosol, nucleus, plastid	40.87	53.41
PGSC0003DMT400004241	Potato	cytosol	45.22	52.53
Solyc01g088660.2.1	Tomato	cytosol, mitochondrion, nucleus	44.35	51.52
GSMUA_Achr5P12630_001	Banana	cytosol	40.0	49.46
KRH77270	Soybean	nucleus	58.26	42.95
KRH57558	Soybean	plastid	59.13	39.77
KRH28217	Soybean	nucleus	54.78	39.62
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	46.09	38.13
KRH04277	Soybean	nucleus, plastid	58.26	37.64
HORVU2Hr1G104960.1	Barley	cytosol, nucleus, plastid	38.26	35.77
Os04t0586000-00	Rice	nucleus	39.13	35.43
Zm00001d002523_P001	Maize	nucleus	39.13	35.16
TraesCS2A01G454800.1	Wheat	cytosol, nucleus, plastid	37.39	34.96
TraesCS2B01G476700.1	Wheat	cytosol, nucleus, plastid	37.39	34.96
TraesCS2D01G455000.1	Wheat	cytosol, nucleus, plastid	37.39	34.96
EES12738	Sorghum	cytosol, nucleus, plastid	39.13	34.88
TraesCS6B01G289300.1	Wheat	nucleus	33.91	30.95
TraesCS6A01G262000.1	Wheat	nucleus	33.04	30.16
TraesCS6D01G242700.1	Wheat	nucleus	32.17	29.37
EES05711	Sorghum	cytosol	33.04	29.23
Zm00001d051492_P001	Maize	cytosol	29.57	27.42
HORVU6Hr1G066610.2	Barley	cytosol, nucleus	31.3	24.49
GSMUA_Achr2P10380_001	Banana	cytosol	48.7	22.49

Protein Annotations

EMBL:ACUP02001957	EnsemblPlants:KRH66418	EnsemblPlantsGene:GLYMA_03G105400	InterPro:IPR007650	InterPro:Zf-FLZ_dom	PANTHER:PTHR33059
PANTHER:PTHR33059:SF73	PFAM:PF04570	PFscan:PS51795	ProteinID:KRH66418	ProteinID:KRH66418.1	SEG:seg
UniParc:UPI00023C12A8	UniProt:K7KE91	MapMan:27.3.3	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:30187959..30189612

Molecular Weight (calculated)

12927.0 Da

IEP (calculated)

8.647

GRAVY (calculated)

-0.883

Length

115 amino acids

Sequence
(BLAST)

001: MTTFPSPPSP SSSSSIPSPR SSMFYYAGSE DHSEEPHFLQ ACFLCRKPLG QNRDIFMYRG NTPFCSKECR QEQIEIDESK EKSWKLSSKR GVRQSETNQN
101: STPNKAVRTG TVAVA

Best Arabidopsis Sequence Match ( AT2G44670.1 )
(BLAST)

1: MASYYSGFLG CEEPHFLESC SLCRKHLGLN SDIFMYRGDK AFCSNECREE QIESDEAKER KWKKSSRSLR KNSSETKESA AGNTVRTGTL VVA

Arabidopsis Description

At2g44670/F16B22.16 [Source:UniProtKB/TrEMBL;Acc:O80506]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.