CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

cytosol 5
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90812
KRG92090
KRG92868
KRG95394
KRG96825
KRG97773
KRH02229
KRH02231
KRH03956
KRH03966
KRH04558
KRH06239
KRH12069
KRH12132
KRH12134
KRH16681
KRH18875
KRH22907
KRH24883
KRH26430
KRH28419
KRH29938
KRH31112
KRH33916
KRH34699
KRH35957
KRH37088
KRH37127
KRH37135
KRH39044
KRH43430
KRH44616
KRH45262
KRH47662
KRH50884
KRH50894
KRH53114
KRH54191
KRH57227
KRH57236
KRH57983
KRH62389
KRH63760
KRH67075
KRH68539
KRH75373
KRH77058

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G29160.1	KRG97773	AT1G07310.1	21798944
AT3G29160.1	KRH31112	AT1G07310.1	21798944
AT3G29160.1	KRG92868	AT1G09020.1	17028154
AT3G29160.1	KRG96825	AT1G09020.1	17028154
AT3G29160.1	KRH02229	AT1G09020.1	17028154
AT3G29160.1	KRH12134	AT1G09020.1	17028154
AT3G29160.1	KRH33916	AT1G09020.1	17028154
AT3G29160.1	KRH37135	AT1G09020.1	17028154
AT3G29160.1	KRH50894	AT1G09020.1	17028154
AT3G29160.1	KRH68539	AT1G09020.1	17028154
AT3G29160.1	KRG92868	AT1G09020.1	21558384
AT3G29160.1	KRG96825	AT1G09020.1	21558384
AT3G29160.1	KRH02229	AT1G09020.1	21558384
AT3G29160.1	KRH12134	AT1G09020.1	21558384
AT3G29160.1	KRH33916	AT1G09020.1	21558384
AT3G29160.1	KRH37135	AT1G09020.1	21558384
AT3G29160.1	KRH50894	AT1G09020.1	21558384
AT3G29160.1	KRH68539	AT1G09020.1	21558384
AT3G29160.1	KRG90812	AT1G25470.1	21798944
AT3G29160.1	KRH04558	AT1G25470.1	21798944
AT3G29160.1	KRH35957	AT1G25470.1	21798944
AT3G29160.1	KRH43430	AT1G25470.1	21798944
AT3G29160.1	KRH45262	AT1G25470.1	21798944
AT3G29160.1	KRH75373	AT1G25470.1	21798944
AT3G29160.1	KRH44616	AT1G51600.1	21798944
AT3G29160.1	KRH16681	AT1G78020.1	21798944
AT3G29160.1	KRH18875	AT1G78020.1	21798944
AT3G29160.1	KRH53114	AT1G78020.1	21798944
AT3G29160.1	KRH62389	AT1G78020.1	21798944
AT3G29160.1	KRH28419	AT2G23290.1	21798944
AT3G29160.1	KRH57983	AT2G23290.1	21798944
AT3G29160.1	KRH77058	AT2G23290.1	21798944
AT3G29160.1	KRH06239	AT3G14180.1	21798944
AT3G29160.1	KRH47662	AT3G14180.1	21798944
AT3G29160.1	KRH39044	AT3G17860.1	21798944
AT3G29160.1	KRH22907	AT3G45240.1	19339507
AT3G29160.1	KRH24883	AT3G45240.1	19339507
AT3G29160.1	KRH26430	AT3G45240.1	19339507
AT3G29160.1	KRH29938	AT3G45240.1	19339507
AT3G29160.1	KRH03956	AT3G48530.1	10417704
AT3G29160.1	KRH54191	AT3G48530.1	10417704
AT3G29160.1	KRH57227	AT3G48530.1	10417704
AT3G29160.1	KRH63760	AT3G48530.1	10417704
AT3G29160.1	KRH03966	AT3G48550.1	21798944
AT3G29160.1	KRH57236	AT3G48550.1	21798944
AT3G29160.1	KRG92090	AT3G52180.1	12148529
AT3G29160.1	KRH34699	AT3G52180.1	12148529
AT3G29160.1	KRH02231	AT4G15730.1	21798944
AT3G29160.1	KRH12132	AT4G15730.1	21798944
AT3G29160.1	KRH37127	AT4G15730.1	21798944
AT3G29160.1	KRH50884	AT4G15730.1	21798944
AT3G29160.1	KRH12069	AT4G15900.1	10220464
AT3G29160.1	KRH37088	AT4G15900.1	10220464
AT3G29160.1	KRG95394	AT5G22355.1	21798944
AT3G29160.1	KRH67075	AT5G22355.1	21798944
AT3G29160.1	KRH22907	AT5G60550.1	19339507
AT3G29160.1	KRH24883	AT5G60550.1	19339507
AT3G29160.1	KRH26430	AT5G60550.1	19339507
AT3G29160.1	KRH29938	AT5G60550.1	19339507

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01228	Soybean	cytosol, nucleus	98.04	97.28
KRH18445	Soybean	cytosol, endoplasmic reticulum	89.8	88.93
VIT_14s0108g01230.t01	Wine grape	cytosol	88.43	87.74
Solyc02g067030.2.1	Tomato	cytosol, nucleus	86.47	85.8
CDY43267	Canola	cytosol	84.12	84.78
CDY37545	Canola	cytosol	84.12	84.78
Bra039146.1-P	Field mustard	cytosol	83.92	84.58
CDY55800	Canola	cytosol	84.31	84.15
CDY34697	Canola	cytosol	84.31	84.15
KRH44935	Soybean	cytosol	45.49	84.06
AT3G01090.2	Thale cress	cytosol	84.9	80.93
AT3G29160.1	Thale cress	cytosol	80.59	80.27
TraesCS1B01G364800.1	Wheat	cytosol	78.63	80.2
TraesCS1D01G353300.1	Wheat	cytosol	78.63	80.2
CDY04058	Canola	cytosol	79.8	80.12
CDY44405	Canola	cytosol	80.39	79.92
GSMUA_AchrUn_...	Banana	cytosol, plasma membrane	71.76	79.91
EES01406	Sorghum	cytosol	78.04	79.76
TraesCS1A01G350500.1	Wheat	cytosol	78.63	79.72
CDX85250	Canola	cytosol	79.22	78.91
Bra025379.1-P	Field mustard	cytosol	79.22	78.91
Bra033088.1-P	Field mustard	cytosol	75.88	78.82
CDX86386	Canola	cytosol	79.22	78.75
CDX74283	Canola	cytosol	77.25	78.64
Os05t0530500-02	Rice	cytosol, plasma membrane	77.65	78.42
EES19859	Sorghum	cytosol	77.06	77.98
Zm00001d005108_P003	Maize	cytosol	76.67	77.73
TraesCS3A01G282800.1	Wheat	cytosol	75.88	76.94
TraesCS3D01G282800.1	Wheat	cytosol	75.88	76.94
HORVU1Hr1G081310.4	Barley	cytosol	78.43	76.92
TraesCS3B01G316500.1	Wheat	cytosol	75.69	76.74
PGSC0003DMT400063153	Potato	cytosol	68.24	69.05
HORVU3Hr1G069190.1	Barley	cytosol, plastid	75.88	67.78
GSMUA_Achr10P...	Banana	cytosol	81.18	66.77
Bra021482.1-P	Field mustard	cytosol	75.69	60.5
Zm00001d010811_P002	Maize	cytosol	67.84	46.69
Zm00001d038745_P002	Maize	cytosol	67.45	41.0
KRG93778	Soybean	endoplasmic reticulum, plasma membrane, vacuole	22.94	40.48
KRH47824	Soybean	cytosol	30.0	34.93
KRH19498	Soybean	cytosol	30.39	34.75
KRH37794	Soybean	cytosol	31.37	34.63
KRH12685	Soybean	cytosol	29.61	34.55
KRH68952	Soybean	cytosol	29.8	34.55
KRH06391	Soybean	cytosol	29.61	34.47
KRH02470	Soybean	cytosol	30.2	34.38
KRH37641	Soybean	cytosol	30.0	34.15
KRH14660	Soybean	cytosol	30.78	33.98
KRH73488	Soybean	cytosol	31.37	33.9
KRH72505	Soybean	cytosol	28.82	33.11
KRH15841	Soybean	cytosol	16.47	32.68
KRH62165	Soybean	cytosol	28.24	32.29
CDX91963	Canola	plasma membrane	78.04	32.1
KRH20252	Soybean	cytosol	28.04	32.06
KRH52875	Soybean	cytosol	27.84	31.84
KRH02907	Soybean	cytosol	29.02	31.69
KRH03685	Soybean	cytosol	27.65	31.61
KRH42588	Soybean	cytoskeleton, cytosol, nucleus	23.33	26.44
KRH45118	Soybean	plasma membrane	17.06	18.63
KRH12829	Soybean	cytosol	9.02	16.85

Protein Annotations

KEGG:04150+2.7.11.1	KEGG:04151+2.7.11.1	KEGG:04714+2.7.11.1	KEGG:04926+2.7.11.1	KEGG:05165+2.7.11.1	Gene3D:1.10.510.10
EntrezGene:100806916	MapMan:18.4.5.1.1	MapMan:27.3.1.1	EMBL:ACUP02004977	EnsemblPlantsGene:GLYMA_08G240300	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464
GO:GO:0006468	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0019538	GO:GO:0035556	UniProt:I1KWA5
InterPro:IPR000719	InterPro:IPR001772	InterPro:IPR015940	InterPro:KA1/Ssp2_C	InterPro:KA1_dom	EnsemblPlants:KRH44934
ProteinID:KRH44934	ProteinID:KRH44934.1	InterPro:Kinase-like_dom_sf	PFAM:PF00069	PFAM:PF00627	PFAM:PF02149
PIRSF:PIRSF000615	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PFscan:PS50030	PFscan:PS50032
PANTHER:PTHR24343	PANTHER:PTHR24343:SF156	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00165	SMART:SM00220
SUPFAM:SSF103243	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	InterPro:UBA	UniParc:UPI0002337DFA	SEG:seg

Description

hypothetical protein

Coordinates

chr8:-:20486165..20494159

Molecular Weight (calculated)

58193.7 Da

IEP (calculated)

8.016

GRAVY (calculated)

-0.266

Length

510 amino acids

Sequence
(BLAST)

001: MDGPAGRGGA GLDMFLPNYK LGKTLGIGSF GKVKIAEHVL TGHKVAIKIL NRRKIKNMEM EEKVRREIKI LRLFMHPHII RLYEVIETPT DIYFVMEYVK
101: SGELFDYIVE KGRLQEDEAR NFFQQIISGV EYCHRNMVVH RDLKPENLLL DSKCNVKIAD FGLSNIMRDG HFLKTSCGSP NYAAPEVISG KLYAGPEVDV
201: WSCGVILYAL LCGTLPFDDE NIPNLFKKIK GGIYTLPSHL SPNARDLIPG MLVVDPMRRM TIPEIRQHPW FQARLPRYLA VPPPDTMQQA KKIDEEILQE
301: VVKMGFDRNQ LVESLGNRIQ NEGTVAYYLL LDNRFRVSSG YLGAEFQETM DSGFNQMQNS SVVGNRFPGY LEYPGVGSRQ QFPVERKWAL GLQSRAHPRE
401: IMTEVLKALQ ELNVCWKKIG HYNMKCRWVA GIPGHHEGMV NNNVDNNNFF GDDSNIIEND AVSTSNVVKF EVQLYKAREE KYLLDLQRVQ GPQFLFLDLC
501: AAFLAQLRVL

Best Arabidopsis Sequence Match ( AT3G01090.1 )
(BLAST)

001: MDGSGTGSRS GVESILPNYK LGRTLGIGSF GRVKIAEHAL TGHKVAIKIL NRRKIKNMEM EEKVRREIKI LRLFMHPHII RLYEVIETPT DIYLVMEYVN
101: SGELFDYIVE KGRLQEDEAR NFFQQIISGV EYCHRNMVVH RDLKPENLLL DSKCNVKIAD FGLSNIMRDG HFLKTSCGSP NYAAPEVISG KLYAGPEVDV
201: WSCGVILYAL LCGTLPFDDE NIPNLFKKIK GGIYTLPSHL SPGARDLIPR MLVVDPMKRV TIPEIRQHPW FQAHLPRYLA VPPPDTVQQA KKIDEEILQE
301: VINMGFDRNH LIESLRNRTQ NDGTVTYYLI LDNRFRASSG YLGAEFQETM EGTPRMHPAE SVASPVSHRL PGLMEYQGVG LRSQYPVERK WALGLQSRAH
401: PREIMTEVLK ALQDLNVCWK KIGHYNMKCR WVPNSSADGM LSNSMHDNNY FGDESSIIEN EAAVKSPNVV KFEIQLYKTR DDKYLLDLQR VQGPQFLFLD
501: LCAAFLAQLR VL

Arabidopsis Description

KIN10SNF1-related protein kinase catalytic subunit alpha KIN10 [Source:UniProtKB/Swiss-Prot;Acc:Q38997]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.