CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
plastid 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97765
KRH01228
KRH14977
KRH18445
KRH31120
KRH44934
KRH73164

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09020.1	KRG97765	AT2G40000.1	17028154
AT1G09020.1	KRH14977	AT2G40000.1	17028154
AT1G09020.1	KRH31120	AT2G40000.1	17028154
AT1G09020.1	KRH73164	AT2G40000.1	17028154
AT1G09020.1	KRH01228	AT3G29160.1	17028154
AT1G09020.1	KRH18445	AT3G29160.1	17028154
AT1G09020.1	KRH44934	AT3G29160.1	17028154
AT1G09020.1	KRG97765	AT3G55840.1	17028154
AT1G09020.1	KRH14977	AT3G55840.1	17028154
AT1G09020.1	KRH31120	AT3G55840.1	17028154
AT1G09020.1	KRH73164	AT3G55840.1	17028154

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33916	Soybean	cytosol	42.39	86.92
KRG96825	Soybean	cytosol	73.05	74.27
KRH68539	Soybean	cytosol	72.02	73.22
VIT_14s0128g00890.t01	Wine grape	cytosol	70.37	70.95
Solyc01g099280.2.1	Tomato	plastid	66.05	66.46
AT1G09020.1	Thale cress	cytosol, plastid	66.46	66.32
PGSC0003DMT400063659	Potato	cytosol, plastid	65.84	66.25
Bra018586.1-P	Field mustard	plastid	58.85	65.15
CDX95016	Canola	plastid	64.4	64.8
CDX93522	Canola	plastid	64.4	64.67
CDY31116	Canola	plastid	63.99	64.52
CDY22651	Canola	mitochondrion, plastid	63.99	64.52
CDY06344	Canola	mitochondrion, plastid	63.99	64.52
KRH12134	Soybean	nucleus	65.02	64.36
CDY32146	Canola	plastid	63.58	64.11
KRH37135	Soybean	cytosol	64.4	63.62
Bra030752.1-P	Field mustard	plastid	48.77	62.53
Bra031654.1-P	Field mustard	plastid	62.55	62.3
KRH50894	Soybean	nucleus	61.73	62.24
KRH02229	Soybean	nucleus	61.11	61.62
GSMUA_AchrUn_...	Banana	cytosol, nucleus, peroxisome	23.66	58.97

Protein Annotations

EntrezGene:100790062	MapMan:18.4.5.1.4	Gene3D:2.60.40.10	MapMan:27.3.1.4	Gene3D:3.10.580.10	EMBL:ACUP02012768
InterPro:AMPK1_CBM	InterPro:CBS_dom	EnsemblPlantsGene:GLYMA_20G234600	UniProt:I1NIZ8	InterPro:IPR000644	InterPro:IPR013783
InterPro:Ig-like_fold	InterPro:Ig_E-set	EnsemblPlants:KRG92868	ProteinID:KRG92868	ProteinID:KRG92868.1	ProteinID:KRG92869.1
PFAM:PF00571	PFAM:PF16561	PFscan:PS51371	PANTHER:PTHR13780	PANTHER:PTHR13780:SF92	SMART:SM00116
SUPFAM:SSF54631	SUPFAM:SSF81296	UniParc:UPI000233DDFC	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:46713441..46727839

Molecular Weight (calculated)

53901.5 Da

IEP (calculated)

7.333

GRAVY (calculated)

0.008

Length

486 amino acids

Sequence
(BLAST)

001: MNFGVEMFGA SRGHGSGGVV RPVLIPKRFV WPHGGRRVFL TGSFTRWSAF IPMSPMEGCP TVFQVICSLP PGYHQYKFNV DGEWRHDEHQ PFVSGDCGIV
101: NTMYLVREPD ILPPILSAET PGQSHMEVDN DIFGHVEANP RMSESDLQVS KHRLSIFLST HTAYELLPQS GKVVALDITL PVKQAFHALY QEGISMAPVW
201: DSNKCQFVGM LSAMDFILIL KELGIHGSNL TEEQLETHTI AAWREAKVQE CRTDSNGRTY SQHLVHAGPL ECLKDVALKI LQNKVATVPI IHSSSEDDSF
301: PQLLHLVSLT EILKCICRHF EHSSDSLPIL QLPIGSIPVG TWVSKVGESN KKPLAMLRPN ASLGDALSLL IQAEVSSIPI VDTNDSLLDI YSRRDIIALV
401: KDKVYARISL AGFSIHQALL LGRDARFPYG LRNGPRCHMC LRSDSLHKVM VRLANPGVRR LVVVEAGSRR VEGIISIGDV FRLLLS

Best Arabidopsis Sequence Match ( AT1G09020.1 )
(BLAST)

001: MFGSTLDSSR GNSAASGQLL TPTRFVWPYG GRRVFLSGSF TRWTEHVPMS PLEGCPTVFQ VICNLTPGYH QYKFFVDGEW RHDEHQPFVS GNGGVVNTIF
101: ITGPDMVPAG FSPETLGRSN MDVDDVFLRT ADPSQEAVPR MSGVDLELSR HRISVLLSTR TAYELLPESG KVIALDVNLP VKQAFHILYE QGIPLAPLWD
201: FGKGQFVGVL GPLDFILILR ELGTHGSNLT EEELETHTIA AWKEGKAHIS RQYDGSGRPY PRPLVQVGPY DNLKDVALKI LQNKVAAVPV IYSSLQDGSY
301: PQLLHLASLS GILKCICRYF RHSSSSLPIL QQPICSIPLG TWVPRIGESS SKPLATLRPH ASLGSALALL VQAEVSSIPV VDDNDSLIDI YSRSDITALA
401: KDKAYAQIHL DDMTVHQALQ LGQDASPPYG IFNGQRCHMC LRSDSLVKVM ERLANPGVRR LVIVEAGSKR VEGIISLSDV FQFLLGL

Arabidopsis Description

SNF4Sucrose nonfermenting 4-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q944A6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.