CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68585
CDX72167
CDX72197
CDX74813
CDX85250
CDX86386
CDY04058
CDY04614
CDY07047
CDY20507
CDY24933
CDY27261
CDY44405
CDY60990
CDY61713
CDY70017

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09020.1	CDX68585	AT2G40000.1	17028154
AT1G09020.1	CDX72167	AT2G40000.1	17028154
AT1G09020.1	CDX74813	AT2G40000.1	17028154
AT1G09020.1	CDY04614	AT2G40000.1	17028154
AT1G09020.1	CDY07047	AT2G40000.1	17028154
AT1G09020.1	CDY20507	AT2G40000.1	17028154
AT1G09020.1	CDY24933	AT2G40000.1	17028154
AT1G09020.1	CDY60990	AT2G40000.1	17028154
AT1G09020.1	CDY61713	AT2G40000.1	17028154
AT1G09020.1	CDY70017	AT2G40000.1	17028154
AT1G09020.1	CDX85250	AT3G29160.1	17028154
AT1G09020.1	CDX86386	AT3G29160.1	17028154
AT1G09020.1	CDY04058	AT3G29160.1	17028154
AT1G09020.1	CDY44405	AT3G29160.1	17028154
AT1G09020.1	CDX72197	AT3G55840.1	17028154
AT1G09020.1	CDY27261	AT3G55840.1	17028154

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06344	Canola	mitochondrion, plastid	98.76	98.76
CDX93522	Canola	plastid	93.15	92.77
CDX95016	Canola	plastid	92.95	92.75
AT1G09020.1	Thale cress	cytosol, plastid	92.74	91.79
CDY31116	Canola	plastid	91.49	91.49
CDY32146	Canola	plastid	90.87	90.87
VIT_14s0128g00890.t01	Wine grape	cytosol	76.56	76.56
Solyc01g099280.2.1	Tomato	plastid	71.16	71.01
KRG96825	Soybean	cytosol	68.88	69.46
KRH68539	Soybean	cytosol	68.05	68.62
KRH12134	Soybean	nucleus	68.88	67.62
KRH37135	Soybean	cytosol	68.67	67.28
VIT_05s0020g01580.t01	Wine grape	cytosol	67.22	65.99
KRH50894	Soybean	nucleus	65.77	65.77
KRH02229	Soybean	nucleus	64.73	64.73
Solyc01g067590.2.1	Tomato	cytosol	64.32	64.32
KRG92868	Soybean	cytosol, plastid	64.52	63.99
KRH33916	Soybean	cytosol	31.33	63.71
TraesCS5B01G559100.1	Wheat	cytosol, plastid	64.94	62.98
TraesCS5D01G565200.3	Wheat	cytosol, nucleus, peroxisome, plastid	64.94	62.98
Zm00001d012817_P002	Maize	cytosol	64.52	62.7
TraesCS4A01G320000.1	Wheat	cytosol, nucleus, peroxisome, plastid	64.52	62.58
HORVU5Hr1G124410.12	Barley	plastid	64.32	62.37
EER93064	Sorghum	cytosol	63.69	61.9
GSMUA_AchrUn_...	Banana	cytosol, nucleus, peroxisome	24.07	59.49
Zm00001d034896_P003	Maize	golgi, plasma membrane	59.75	53.33
GSMUA_AchrUn_...	Banana	cytosol	14.52	43.21
PGSC0003DMT400027640	Potato	cytosol	27.59	34.46
Os04t0401300-01	Rice	mitochondrion	1.24	4.8

Protein Annotations

MapMan:18.4.5.1.4	Gene3D:2.60.40.10	MapMan:27.3.1.4	Gene3D:3.10.580.10	UniProt:A0A078GBB2	InterPro:AMPK1_CBM
InterPro:CBS_dom	EnsemblPlants:CDY22651	ProteinID:CDY22651	ProteinID:CDY22651.1	EnsemblPlantsGene:GSBRNA2T00019321001	InterPro:IPR000644
InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Ig_E-set	PFAM:PF00571	PFAM:PF16561	PFscan:PS51371
PANTHER:PTHR13780	PANTHER:PTHR13780:SF92	SMART:SM00116	SUPFAM:SSF54631	SUPFAM:SSF81296	UniParc:UPI0004EABCD3

Description

BnaC08g42850DBnaC08g42850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GBB2]

Coordinates

chrLK032134:+:298473..303085

Molecular Weight (calculated)

53005.8 Da

IEP (calculated)

6.390

GRAVY (calculated)

-0.039

Length

482 amino acids

Sequence
(BLAST)

001: MFGSTLANNR GNSAASAQLV TPTRFVWPYG GTRVFLSGSF TRWTEHVPMS PLEGCPSVFQ VICNLTPGYH QYKFYVDGEW RHDEHQPFVN GNGGVMNTIL
101: ITLPDMVPTG FSPSNMDVDD FSQQMADPSQ DSIPRMSAVD LEMSRHRISV LLSTCTAYEL LPESGKVIAL DVNLPVKQAF HILYEQGIPL APLWDFGKGQ
201: FVGVLGPLDF ILILKELGTH GSNLTEEELE THTIAAWKEG KAHISRQYDG TGRPYPRPLV QVGPYDNLKD VAMKILQNKV AAVPVIYSSL QDESYPQLLH
301: LASLSGILKC ICRYFRHSSS SLPILQQPIC SIPLGTWVPR IGESSSKPLA TLRPHASLGS ALSLLVQAEV SAIPVVDDND SLIDIYSRSD ITALAKDKAY
401: AQIHLDDMTV HQALQLGQDA SPPYGMFNGQ RCQMCLRSDS LGKVIERLAN PGVRRLVIVE AGSKRVEGII SLSDVFKFLL GL

Best Arabidopsis Sequence Match ( AT1G09020.1 )
(BLAST)

001: MFGSTLDSSR GNSAASGQLL TPTRFVWPYG GRRVFLSGSF TRWTEHVPMS PLEGCPTVFQ VICNLTPGYH QYKFFVDGEW RHDEHQPFVS GNGGVVNTIF
101: ITGPDMVPAG FSPETLGRSN MDVDDVFLRT ADPSQEAVPR MSGVDLELSR HRISVLLSTR TAYELLPESG KVIALDVNLP VKQAFHILYE QGIPLAPLWD
201: FGKGQFVGVL GPLDFILILR ELGTHGSNLT EEELETHTIA AWKEGKAHIS RQYDGSGRPY PRPLVQVGPY DNLKDVALKI LQNKVAAVPV IYSSLQDGSY
301: PQLLHLASLS GILKCICRYF RHSSSSLPIL QQPICSIPLG TWVPRIGESS SKPLATLRPH ASLGSALALL VQAEVSSIPV VDDNDSLIDI YSRSDITALA
401: KDKAYAQIHL DDMTVHQALQ LGQDASPPYG IFNGQRCHMC LRSDSLVKVM ERLANPGVRR LVIVEAGSKR VEGIISLSDV FQFLLGL

Arabidopsis Description

SNF4Sucrose nonfermenting 4-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q944A6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.