Factsheet for HORVU5Hr1G124410.12

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G081310.4
HORVU3Hr1G069190.1
HORVU3Hr1G084830.1
HORVU3Hr1G111690.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09020.1	HORVU3Hr1G084830.1	AT2G40000.1	17028154
AT1G09020.1	HORVU3Hr1G111690.1	AT2G40000.1	17028154
AT1G09020.1	HORVU1Hr1G081310.4	AT3G29160.1	17028154
AT1G09020.1	HORVU3Hr1G069190.1	AT3G29160.1	17028154
AT1G09020.1	HORVU3Hr1G084830.1	AT3G55840.1	17028154
AT1G09020.1	HORVU3Hr1G111690.1	AT3G55840.1	17028154

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G565200.3	Wheat	cytosol, nucleus, peroxisome, plastid	97.18	97.18
TraesCS5B01G559100.1	Wheat	cytosol, plastid	97.18	97.18
TraesCS4A01G320000.1	Wheat	cytosol, nucleus, peroxisome, plastid	97.18	97.18
Os03t0856400-01	Rice	plasma membrane	84.51	85.19
EER93064	Sorghum	cytosol	84.71	84.88
Zm00001d012817_P002	Maize	cytosol	84.1	84.27
Zm00001d034896_P003	Maize	golgi, plasma membrane	78.07	71.85
KRH02229	Soybean	nucleus	63.98	65.98
KRH50894	Soybean	nucleus	63.98	65.98
KRH37135	Soybean	cytosol	64.59	65.24
KRH12134	Soybean	nucleus	64.19	64.97
CDY31116	Canola	plastid	62.98	64.94
Bra030752.1-P	Field mustard	plastid	49.5	64.91
CDY32146	Canola	plastid	62.78	64.73
Bra018586.1-P	Field mustard	plastid	57.14	64.69
AT1G09020.1	Thale cress	cytosol, plastid	63.38	64.68
CDY06344	Canola	mitochondrion, plastid	62.58	64.52
CDX95016	Canola	plastid	62.58	64.39
CDY22651	Canola	mitochondrion, plastid	62.37	64.32
CDX93522	Canola	plastid	62.17	63.84
VIT_05s0020g01580.t01	Wine grape	cytosol	62.58	63.34
Bra031654.1-P	Field mustard	plastid	61.57	62.7
Solyc01g067590.2.1	Tomato	cytosol	59.96	61.83
PGSC0003DMT400027641	Potato	cytosol	42.66	52.74
GSMUA_AchrUn_...	Banana	cytosol	14.89	45.68
HORVU2Hr1G071540.1	Barley	mitochondrion	27.57	30.04

Protein Annotations

MapMan:18.4.5.1.4	Gene3D:2.60.40.10	MapMan:27.3.1.4	Gene3D:3.10.580.10	EMBL:AK370845	EMBL:AK373445
InterPro:AMPK1_CBM	InterPro:CBS_dom	UniProt:F2E3X1	EnsemblPlantsGene:HORVU5Hr1G124410	EnsemblPlants:HORVU5Hr1G124410.12	InterPro:IPR000644
InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Ig_E-set	PFAM:PF00571	PFAM:PF16561	PFscan:PS51371
PANTHER:PTHR13780	PANTHER:PTHR13780:SF92	SMART:SM00116	SUPFAM:SSF54631	SUPFAM:SSF81296	UniParc:UPI00020080BB
SEG:seg	:	:	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2E3X1]

Coordinates

chrchr5H:-:666183641..666190855

Molecular Weight (calculated)

54175.9 Da

IEP (calculated)

6.653

GRAVY (calculated)

-0.109

Length

497 amino acids

Sequence
(BLAST)

001: MFSHGADPAH DASAAGGGVG VSAGGPAVPT RFVWPHGGKR VFLSGSFTRW SEHLPMSPVE GCPTVFQAIC SLPPGIYQYK FNVDGQWRHD EGQPTITGEY
101: GVVNTLYLTR EFDHINTVLS PITPGSRMDV DGESSQRMGS LSDGALQEGS PRISEAAIQI SRCRVAEYLN AHIGYDLLPD SGKVIALDIN LPVKQSFHIL
201: HEQGIPVAPL WDSIRGQFVG LLSPLDFILI LRELETHGSN LTEEQLETHT ISAWKEAKRQ TYGRNDGQLR SNQHLVHATP YESLRGIAMK ILETGISTVP
301: IIYSSSSDGS FPQLLHLASL SGILKCICRY FKNSTGSLPI LNQPVCSIPL GTWAPKSGEP NGHPLAMLRP NTSLSSALNL LVQAGVSSIP IVDDNDSLID
401: TYSRSDITAL AKDKVYTHIR LDEMTIHQAL QLGQDANSPF GLFNGQRCQM CLRSDTLMKV MERLANPGVR RVFIVEAGSK RVEGVISLSD IFKLLLS

Best Arabidopsis Sequence Match ( AT1G09020.1 )
(BLAST)

001: MFGSTLDSSR GNSAASGQLL TPTRFVWPYG GRRVFLSGSF TRWTEHVPMS PLEGCPTVFQ VICNLTPGYH QYKFFVDGEW RHDEHQPFVS GNGGVVNTIF
101: ITGPDMVPAG FSPETLGRSN MDVDDVFLRT ADPSQEAVPR MSGVDLELSR HRISVLLSTR TAYELLPESG KVIALDVNLP VKQAFHILYE QGIPLAPLWD
201: FGKGQFVGVL GPLDFILILR ELGTHGSNLT EEELETHTIA AWKEGKAHIS RQYDGSGRPY PRPLVQVGPY DNLKDVALKI LQNKVAAVPV IYSSLQDGSY
301: PQLLHLASLS GILKCICRYF RHSSSSLPIL QQPICSIPLG TWVPRIGESS SKPLATLRPH ASLGSALALL VQAEVSSIPV VDDNDSLIDI YSRSDITALA
401: KDKAYAQIHL DDMTVHQALQ LGQDASPPYG IFNGQRCHMC LRSDSLVKVM ERLANPGVRR LVIVEAGSKR VEGIISLSDV FQFLLGL

Arabidopsis Description

SNF4Sucrose nonfermenting 4-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q944A6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.