Factsheet for VIT_05s0020g01580.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_13s0067g00260.t01
VIT_14s0108g01230.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09020.1	VIT_13s0067g00260.t01	AT2G40000.1	17028154
AT1G09020.1	VIT_14s0108g01230.t01	AT3G29160.1	17028154
AT1G09020.1	VIT_13s0067g00260.t01	AT3G55840.1	17028154

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH12134	Soybean	nucleus	77.19	77.19
KRH37135	Soybean	cytosol	76.58	76.42
VIT_14s0128g00890.t01	Wine grape	cytosol	73.93	75.31
KRH02229	Soybean	nucleus	72.3	73.65
KRH50894	Soybean	nucleus	72.1	73.44
Solyc01g067590.2.1	Tomato	cytosol	68.64	69.92
AT1G09020.1	Thale cress	cytosol, plastid	68.64	69.2
CDY31116	Canola	plastid	67.82	69.09
Bra030752.1-P	Field mustard	plastid	52.75	68.34
CDY32146	Canola	plastid	67.01	68.26
CDX95016	Canola	plastid	66.4	67.49
CDY06344	Canola	mitochondrion, plastid	66.19	67.43
CDY22651	Canola	mitochondrion, plastid	65.99	67.22
Bra018586.1-P	Field mustard	plastid	60.08	67.2
CDX93522	Canola	plastid	66.19	67.15
Os03t0856400-01	Rice	plasma membrane	65.58	65.31
Bra031654.1-P	Field mustard	plastid	64.77	65.16
Zm00001d012817_P002	Maize	cytosol	65.38	64.72
EER93064	Sorghum	cytosol	64.36	63.71
TraesCS5D01G565200.3	Wheat	cytosol, nucleus, peroxisome, plastid	64.36	63.58
TraesCS4A01G320000.1	Wheat	cytosol, nucleus, peroxisome, plastid	64.15	63.38
TraesCS5B01G559100.1	Wheat	cytosol, plastid	63.95	63.18
HORVU5Hr1G124410.12	Barley	plastid	63.34	62.58
PGSC0003DMT400027641	Potato	cytosol	47.25	57.71
Zm00001d034896_P003	Maize	golgi, plasma membrane	61.1	55.56
GSMUA_AchrUn_...	Banana	cytosol	15.07	45.68

Protein Annotations

EntrezGene:100240823	wikigene:100240823	MapMan:18.4.5.1.4	Gene3D:2.60.40.10	MapMan:27.3.1.4	Gene3D:3.10.580.10
InterPro:AMPK1_CBM	ProteinID:CBI26085	ProteinID:CBI26085.3	InterPro:CBS_dom	UniProt:D7T6G4	EMBL:FN595749
InterPro:IPR000644	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Ig_E-set	EntrezGene:LOC100240823	wikigene:LOC100240823
PFAM:PF00571	PFAM:PF16561	PFscan:PS51371	PANTHER:PTHR13780	PANTHER:PTHR13780:SF92	SMART:SM00116
SUPFAM:SSF54631	SUPFAM:SSF81296	UniParc:UPI00015C7AEB	ArrayExpress:VIT_05s0020g01580	EnsemblPlantsGene:VIT_05s0020g01580	EnsemblPlants:VIT_05s0020g01580.t01
unigene:Vvi.20135	RefSeq:XP_002274373	RefSeq:XP_002274373.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr5:+:3280612..3300082

Molecular Weight (calculated)

54572.3 Da

IEP (calculated)

5.684

GRAVY (calculated)

-0.037

Length

491 amino acids

Sequence
(BLAST)

001: MLSPGMDSAR EGGGVAGTVL IPMNFVWSYG GRSVYLSGSF TGWTNLYQMS PVEGCPTVFQ VICSLTPGYH QYKFFVDGEW RHDENQPFIS CTYGIVNTVL
101: LARESDYIPP TISPAVPSLT NMDVDNEAFQ QLVRISDGSR HEAVPRIQET DLEVSRHRVS LFLSTHTVYE LLPESGKVIT LDVDLPVKQA FHILYEQGIS
201: IAPLWDYFKG RFVGVLSALD FILILRELGN HGSNLTEEEL ETHTISAWKE GKGYLNRQID GNGRAFSRGL IHAGPYDNLK DVALKILENE VATVPIIHSS
301: SEDGSFPQLL HLASLSGILK CICRYFRHSS NSLPVLQLPI FAIPVGTWVS EIGEANQRPL AKLHPSASLS SALSLLVQAQ VSSIPIVDDN DSLLDIYSRS
401: DITALAKNRV YAHINLDDMT IHQALQLGQD PYSPYEFNSQ RCQMCLRTDP LHEVMDRLAN PGVRRLVIVE AGSRRVEGIV SLRDIFKFLL G

Best Arabidopsis Sequence Match ( AT1G09020.1 )
(BLAST)

001: MFGSTLDSSR GNSAASGQLL TPTRFVWPYG GRRVFLSGSF TRWTEHVPMS PLEGCPTVFQ VICNLTPGYH QYKFFVDGEW RHDEHQPFVS GNGGVVNTIF
101: ITGPDMVPAG FSPETLGRSN MDVDDVFLRT ADPSQEAVPR MSGVDLELSR HRISVLLSTR TAYELLPESG KVIALDVNLP VKQAFHILYE QGIPLAPLWD
201: FGKGQFVGVL GPLDFILILR ELGTHGSNLT EEELETHTIA AWKEGKAHIS RQYDGSGRPY PRPLVQVGPY DNLKDVALKI LQNKVAAVPV IYSSLQDGSY
301: PQLLHLASLS GILKCICRYF RHSSSSLPIL QQPICSIPLG TWVPRIGESS SKPLATLRPH ASLGSALALL VQAEVSSIPV VDDNDSLIDI YSRSDITALA
401: KDKAYAQIHL DDMTVHQALQ LGQDASPPYG IFNGQRCHMC LRSDSLVKVM ERLANPGVRR LVIVEAGSKR VEGIISLSDV FQFLLGL

Arabidopsis Description

SNF4Sucrose nonfermenting 4-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q944A6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.