Factsheet for Bra018586.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000158.1-P
Bra004994.1-P
Bra007195.1-P
Bra017040.1-P
Bra025379.1-P
Bra033088.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09020.1	Bra000158.1-P	AT2G40000.1	17028154
AT1G09020.1	Bra004994.1-P	AT2G40000.1	17028154
AT1G09020.1	Bra017040.1-P	AT2G40000.1	17028154
AT1G09020.1	Bra025379.1-P	AT3G29160.1	17028154
AT1G09020.1	Bra033088.1-P	AT3G29160.1	17028154
AT1G09020.1	Bra007195.1-P	AT3G55840.1	17028154

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030752.1-P	Field mustard	plastid	78.82	91.29
CDX93522	Canola	plastid	100.0	90.7
AT1G09020.1	Thale cress	cytosol, plastid	92.94	83.78
Bra031654.1-P	Field mustard	plastid	92.71	83.4
VIT_14s0128g00890.t01	Wine grape	cytosol	76.99	70.12
Solyc01g099280.2.1	Tomato	plastid	71.75	65.22
KRG96825	Soybean	cytosol	69.7	64.02
KRH68539	Soybean	cytosol	68.56	62.97
KRH12134	Soybean	nucleus	69.93	62.53
KRH50894	Soybean	nucleus	67.88	61.83
KRH37135	Soybean	cytosol	69.25	61.79
KRH02229	Soybean	nucleus	67.2	61.2
GSMUA_AchrUn_...	Banana	cytosol, nucleus, peroxisome	26.88	60.51
VIT_05s0020g01580.t01	Wine grape	cytosol	67.2	60.08
Solyc01g067590.2.1	Tomato	cytosol	64.92	59.13
KRG92868	Soybean	cytosol, plastid	65.15	58.85
TraesCS5B01G559100.1	Wheat	cytosol, plastid	65.38	57.75
TraesCS4A01G320000.1	Wheat	cytosol, nucleus, peroxisome, plastid	65.15	57.55
TraesCS5D01G565200.3	Wheat	cytosol, nucleus, peroxisome, plastid	65.15	57.55
Zm00001d012817_P002	Maize	cytosol	64.69	57.26
HORVU5Hr1G124410.12	Barley	plastid	64.69	57.14
EER93064	Sorghum	cytosol	64.46	57.06
KRH33916	Soybean	cytosol	29.39	54.43
Zm00001d034896_P003	Maize	golgi, plasma membrane	60.59	49.26
GSMUA_AchrUn_...	Banana	cytosol	15.72	42.59
PGSC0003DMT400027640	Potato	cytosol	30.07	34.2
Os04t0401300-01	Rice	mitochondrion	1.59	5.6

Protein Annotations

EnsemblPlants:Bra018586.1	EnsemblPlants:Bra018586.1-P	EnsemblPlantsGene:Bra018586	Gene3D:2.60.40.10	Gene3D:3.10.580.10	InterPro:AMPK1_CBM
InterPro:CBS_dom	InterPro:IPR000644	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Ig_E-set	PANTHER:PTHR13780
PANTHER:PTHR13780:SF92	PFAM:PF00571	PFAM:PF16561	PFscan:PS51371	SMART:SM00116	SUPFAM:SSF54631
SUPFAM:SSF81296	UniParc:UPI000253E81E	UniProt:M4DPZ5	MapMan:18.4.5.1.4	MapMan:27.3.1.4	:

Description

AT1G09020 (E=2e-119) SNF4, ATSNF4 | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4); protein kinase activator

Coordinates

chrA06:-:3105684..3109656

Molecular Weight (calculated)

48162.0 Da

IEP (calculated)

6.943

GRAVY (calculated)

0.018

Length

439 amino acids

Sequence
(BLAST)

001: MFGSTVDTSR GNSAASGQQQ LLTPTRFVWP YGGRRVFLSG SFTRWTEHVP MSPLEGCPTV FQVICNLTPG YHQYKFYVDG EWRHDEHQPF VNANGGVMNT
101: IFITGPDMAP AAFSPSNMDV DDFSQRVADP SQDSIPRMSA VDLDMSRHRI SALLSNRTAY ELLPESGKVI ALDVNLPVKQ AFHILYEQGI PLAPLWDFGK
201: GQFVGVLGPL DFILILREVG PYDNLKDVAL KILQNKVAAV PVIYSSLQDG SYPQLLHLAS LSGILKCICR YFRHSSSSLP ILQQPICSIP LGTWVPRIGE
301: SSSKPLATLR PHASLGSALS LLVQAGVSSI PVVDDNDSLI DIYSRSDITA LAKDKAYAQI HLDDMTVHQA LQLGQDASPP YGIFNGQRCH MCLRSDSLGK
401: VIERLANPGV RRLVIVEAGS KRVEGIISLS DVFRFLLGL

Best Arabidopsis Sequence Match ( AT1G09020.1 )
(BLAST)

001: MFGSTLDSSR GNSAASGQLL TPTRFVWPYG GRRVFLSGSF TRWTEHVPMS PLEGCPTVFQ VICNLTPGYH QYKFFVDGEW RHDEHQPFVS GNGGVVNTIF
101: ITGPDMVPAG FSPETLGRSN MDVDDVFLRT ADPSQEAVPR MSGVDLELSR HRISVLLSTR TAYELLPESG KVIALDVNLP VKQAFHILYE QGIPLAPLWD
201: FGKGQFVGVL GPLDFILILR ELGTHGSNLT EEELETHTIA AWKEGKAHIS RQYDGSGRPY PRPLVQVGPY DNLKDVALKI LQNKVAAVPV IYSSLQDGSY
301: PQLLHLASLS GILKCICRYF RHSSSSLPIL QQPICSIPLG TWVPRIGESS SKPLATLRPH ASLGSALALL VQAEVSSIPV VDDNDSLIDI YSRSDITALA
401: KDKAYAQIHL DDMTVHQALQ LGQDASPPYG IFNGQRCHMC LRSDSLVKVM ERLANPGVRR LVIVEAGSKR VEGIISLSDV FQFLLGL

Arabidopsis Description

SNF4Sucrose nonfermenting 4-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q944A6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.