Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- mitochondrion 5
- plastid 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Os01t0855600-01 | |
Os05t0530500-02 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G09020.1 | Os01t0855600-01 | AT2G40000.1 | 17028154 |
AT1G09020.1 | Os05t0530500-02 | AT3G29160.1 | 17028154 |
AT1G09020.1 | Os01t0855600-01 | AT3G55840.1 | 17028154 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra018586.1-P | Field mustard | plastid | 5.6 | 1.59 |
Bra030752.1-P | Field mustard | plastid | 4.8 | 1.58 |
CDY31116 | Canola | plastid | 5.6 | 1.45 |
CDY32146 | Canola | plastid | 5.6 | 1.45 |
CDX95016 | Canola | plastid | 5.6 | 1.45 |
CDX93522 | Canola | plastid | 5.6 | 1.45 |
AT1G09020.1 | Thale cress | cytosol, plastid | 5.6 | 1.44 |
CDY06344 | Canola | mitochondrion, plastid | 4.8 | 1.24 |
CDY22651 | Canola | mitochondrion, plastid | 4.8 | 1.24 |
Bra031654.1-P | Field mustard | plastid | 4.8 | 1.23 |
Os03t0856400-01 | Rice | plasma membrane | 4.8 | 1.22 |
PGSC0003DMT400027640 | Potato | cytosol | 1.6 | 0.52 |
Protein Annotations
Gene3D:2.60.40.10 | MapMan:35.2 | UniProt:A0A0P0WA33 | InterPro:AMPK1_CBM | ProteinID:BAS89042.1 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006464 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0019538 | GO:GO:0031588 |
GO:GO:0045859 | InterPro:IPR013783 | InterPro:Ig-like_fold | InterPro:Ig_E-set | EnsemblPlantsGene:Os04g0401300 | EnsemblPlants:Os04t0401300-01 |
PFAM:PF16561 | PANTHER:PTHR10343 | PANTHER:PTHR10343:SF45 | InterPro:SIP2/GAL83 | SUPFAM:SSF81296 | TMHMM:TMhelix |
UniParc:UPI000393B705 | : | : | : | : | : |
Description
cystathionine b-synthase domain containing protein OsCBSCBS4, CBS domain containing protein OsCBSCBS4Similar to OSIGBa0155K12.5 protein. (Os04t0401300-01)
Coordinates
chr4:-:19851402..19859052
Molecular Weight (calculated)
14157.3 Da
IEP (calculated)
4.767
GRAVY (calculated)
0.286
Length
125 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLRRFAWPY GGQRASFCGS FTGWRECPMG LVGAEFQVVF DLPPGVYQYR FLVDGVWRCD ETKPCVRDEY GLISNEVLVD NTHPVVQPET SIRVVSMDEG
101: TILTTVCIKV SFVILCILFM LPNNL
101: TILTTVCIKV SFVILCILFM LPNNL
001: MFGSTLDSSR GNSAASGQLL TPTRFVWPYG GRRVFLSGSF TRWTEHVPMS PLEGCPTVFQ VICNLTPGYH QYKFFVDGEW RHDEHQPFVS GNGGVVNTIF
101: ITGPDMVPAG FSPETLGRSN MDVDDVFLRT ADPSQEAVPR MSGVDLELSR HRISVLLSTR TAYELLPESG KVIALDVNLP VKQAFHILYE QGIPLAPLWD
201: FGKGQFVGVL GPLDFILILR ELGTHGSNLT EEELETHTIA AWKEGKAHIS RQYDGSGRPY PRPLVQVGPY DNLKDVALKI LQNKVAAVPV IYSSLQDGSY
301: PQLLHLASLS GILKCICRYF RHSSSSLPIL QQPICSIPLG TWVPRIGESS SKPLATLRPH ASLGSALALL VQAEVSSIPV VDDNDSLIDI YSRSDITALA
401: KDKAYAQIHL DDMTVHQALQ LGQDASPPYG IFNGQRCHMC LRSDSLVKVM ERLANPGVRR LVIVEAGSKR VEGIISLSDV FQFLLGL
101: ITGPDMVPAG FSPETLGRSN MDVDDVFLRT ADPSQEAVPR MSGVDLELSR HRISVLLSTR TAYELLPESG KVIALDVNLP VKQAFHILYE QGIPLAPLWD
201: FGKGQFVGVL GPLDFILILR ELGTHGSNLT EEELETHTIA AWKEGKAHIS RQYDGSGRPY PRPLVQVGPY DNLKDVALKI LQNKVAAVPV IYSSLQDGSY
301: PQLLHLASLS GILKCICRYF RHSSSSLPIL QQPICSIPLG TWVPRIGESS SKPLATLRPH ASLGSALALL VQAEVSSIPV VDDNDSLIDI YSRSDITALA
401: KDKAYAQIHL DDMTVHQALQ LGQDASPPYG IFNGQRCHMC LRSDSLVKVM ERLANPGVRR LVIVEAGSKR VEGIISLSDV FQFLLGL
Arabidopsis Description
SNF4Sucrose nonfermenting 4-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q944A6]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.