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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • extracellular 2
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
  • mitochondrion 5
  • plastid 1
PPI

Inferred distinct locusB in Crop

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra018586.1-P Field mustard plastid 5.6 1.59
Bra030752.1-P Field mustard plastid 4.8 1.58
CDY31116 Canola plastid 5.6 1.45
CDY32146 Canola plastid 5.6 1.45
CDX95016 Canola plastid 5.6 1.45
CDX93522 Canola plastid 5.6 1.45
AT1G09020.1 Thale cress cytosol, plastid 5.6 1.44
CDY06344 Canola mitochondrion, plastid 4.8 1.24
CDY22651 Canola mitochondrion, plastid 4.8 1.24
Bra031654.1-P Field mustard plastid 4.8 1.23
Os03t0856400-01 Rice plasma membrane 4.8 1.22
PGSC0003DMT400027640 Potato cytosol 1.6 0.52
Protein Annotations
Gene3D:2.60.40.10MapMan:35.2UniProt:A0A0P0WA33InterPro:AMPK1_CBMProteinID:BAS89042.1GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0006464GO:GO:0007154GO:GO:0007165GO:GO:0008150
GO:GO:0008152GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0019538GO:GO:0031588
GO:GO:0045859InterPro:IPR013783InterPro:Ig-like_foldInterPro:Ig_E-setEnsemblPlantsGene:Os04g0401300EnsemblPlants:Os04t0401300-01
PFAM:PF16561PANTHER:PTHR10343PANTHER:PTHR10343:SF45InterPro:SIP2/GAL83SUPFAM:SSF81296TMHMM:TMhelix
UniParc:UPI000393B705:::::
Description
cystathionine b-synthase domain containing protein OsCBSCBS4, CBS domain containing protein OsCBSCBS4Similar to OSIGBa0155K12.5 protein. (Os04t0401300-01)
Coordinates
chr4:-:19851402..19859052
Molecular Weight (calculated)
14157.3 Da
IEP (calculated)
4.767
GRAVY (calculated)
0.286
Length
125 amino acids
Sequence
(BLAST)
001: MVLRRFAWPY GGQRASFCGS FTGWRECPMG LVGAEFQVVF DLPPGVYQYR FLVDGVWRCD ETKPCVRDEY GLISNEVLVD NTHPVVQPET SIRVVSMDEG
101: TILTTVCIKV SFVILCILFM LPNNL
Best Arabidopsis Sequence Match ( AT1G09020.1 )
(BLAST)
001: MFGSTLDSSR GNSAASGQLL TPTRFVWPYG GRRVFLSGSF TRWTEHVPMS PLEGCPTVFQ VICNLTPGYH QYKFFVDGEW RHDEHQPFVS GNGGVVNTIF
101: ITGPDMVPAG FSPETLGRSN MDVDDVFLRT ADPSQEAVPR MSGVDLELSR HRISVLLSTR TAYELLPESG KVIALDVNLP VKQAFHILYE QGIPLAPLWD
201: FGKGQFVGVL GPLDFILILR ELGTHGSNLT EEELETHTIA AWKEGKAHIS RQYDGSGRPY PRPLVQVGPY DNLKDVALKI LQNKVAAVPV IYSSLQDGSY
301: PQLLHLASLS GILKCICRYF RHSSSSLPIL QQPICSIPLG TWVPRIGESS SKPLATLRPH ASLGSALALL VQAEVSSIPV VDDNDSLIDI YSRSDITALA
401: KDKAYAQIHL DDMTVHQALQ LGQDASPPYG IFNGQRCHMC LRSDSLVKVM ERLANPGVRR LVIVEAGSKR VEGIISLSDV FQFLLGL
Arabidopsis Description
SNF4Sucrose nonfermenting 4-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q944A6]
SUBAcon: [plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.