Factsheet for PGSC0003DMT400027640

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400063153

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09020.1	PGSC0003DMT400063153	AT3G29160.1	17028154

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030752.1-P	Field mustard	plastid	31.87	32.45
PGSC0003DMT400063659	Potato	cytosol, plastid	37.82	30.23
Bra018586.1-P	Field mustard	plastid	34.2	30.07
CDX95016	Canola	plastid	35.75	28.57
AT1G09020.1	Thale cress	cytosol, plastid	36.01	28.54
CDX93522	Canola	plastid	35.75	28.51
CDY31116	Canola	plastid	34.97	28.01
CDY32146	Canola	plastid	34.97	28.01
CDY06344	Canola	mitochondrion, plastid	34.46	27.59
CDY22651	Canola	mitochondrion, plastid	34.46	27.59
Bra031654.1-P	Field mustard	plastid	33.94	26.84
PGSC0003DMT400036737	Potato	cytosol	10.62	11.82
PGSC0003DMT400027641	Potato	cytosol	10.36	9.95
Os04t0401300-01	Rice	mitochondrion	0.52	1.6

Protein Annotations

Gene3D:2.60.40.10	Gene3D:3.10.580.10	MapMan:35.1	InterPro:AMPK1_CBM	InterPro:DUF4283	GO:GO:0000003
GO:GO:0000266	GO:GO:0003674	GO:GO:0003824	GO:GO:0004674	GO:GO:0006464	GO:GO:0006810
GO:GO:0006950	GO:GO:0007154	GO:GO:0008150	GO:GO:0008152	GO:GO:0009605	GO:GO:0009856
GO:GO:0009859	GO:GO:0009875	GO:GO:0009987	GO:GO:0009991	GO:GO:0016043	GO:GO:0016301
GO:GO:0016559	GO:GO:0016740	GO:GO:0019538	GO:GO:0019887	GO:GO:0030234	GO:GO:0042149
GO:GO:0045859	GO:GO:0046777	GO:GO:2000377	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Ig_E-set
UniProt:M1APZ6	PFAM:PF14111	PFAM:PF16561	EnsemblPlantsGene:PGSC0003DMG401010657	PGSC:PGSC0003DMG401010657	EnsemblPlants:PGSC0003DMT400027640
PANTHER:PTHR13780	PANTHER:PTHR13780:SF92	SUPFAM:SSF81296	UniParc:UPI0002959114	:	:

Description

AMP-activated protein kinase, gamma regulatory subunit [Source:PGSC_GENE;Acc:PGSC0003DMG401010657]

Coordinates

chr1:-:59210875..59215533

Molecular Weight (calculated)

43392.7 Da

IEP (calculated)

8.208

GRAVY (calculated)

-0.305

Length

386 amino acids

Sequence
(BLAST)

001: MYPSAMDYAR DGGTALIPTR FVWPYGGRSV YLSGTFTGWS QWPMAPVEGC PTVFQTVCSV PPGYHQYKFI VDGEWRHDEN QPFVSGSLGT VNTVLLARES
101: DYLPAVLSAQ IPPSSNMDVD NQAFQRLVRV SDVALPDDAS KISQSDLDIS RHRISAVLST HSAYELLPGS TKVIALDVDL PVKQAFHILH EQAELKFGLN
201: GFERSRSLMR RTTFSKKAME WIVSVLQEAS KDSGTHRRRR IDPKVPYADS VRTSKWQSKE ASESLISNKN SCIIISGGDA NQENGLLGRY IIGSFSGEEK
301: EKLTLSDIRK WVVNTWKNAF GVKIYQMGVH SFLFEFPNKH MVECILKGQC LETIEDSSRM VVADYRLLHQ LRGLNVDKSS PPFRIY

Best Arabidopsis Sequence Match ( AT1G09020.1 )
(BLAST)

001: MFGSTLDSSR GNSAASGQLL TPTRFVWPYG GRRVFLSGSF TRWTEHVPMS PLEGCPTVFQ VICNLTPGYH QYKFFVDGEW RHDEHQPFVS GNGGVVNTIF
101: ITGPDMVPAG FSPETLGRSN MDVDDVFLRT ADPSQEAVPR MSGVDLELSR HRISVLLSTR TAYELLPESG KVIALDVNLP VKQAFHILYE QGIPLAPLWD
201: FGKGQFVGVL GPLDFILILR ELGTHGSNLT EEELETHTIA AWKEGKAHIS RQYDGSGRPY PRPLVQVGPY DNLKDVALKI LQNKVAAVPV IYSSLQDGSY
301: PQLLHLASLS GILKCICRYF RHSSSSLPIL QQPICSIPLG TWVPRIGESS SKPLATLRPH ASLGSALALL VQAEVSSIPV VDDNDSLIDI YSRSDITALA
401: KDKAYAQIHL DDMTVHQALQ LGQDASPPYG IFNGQRCHMC LRSDSLVKVM ERLANPGVRR LVIVEAGSKR VEGIISLSDV FQFLLGL

Arabidopsis Description

SNF4Sucrose nonfermenting 4-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q944A6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.