Factsheet for PGSC0003DMT400036737

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g118070.2.1	Tomato	extracellular	87.32	65.02
Zm00001d003864_P005	Maize	mitochondrion	38.9	29.87
HORVU2Hr1G071540.1	Barley	mitochondrion	39.19	29.82
TraesCS2A01G289200.2	Wheat	mitochondrion	38.9	29.61
TraesCS2D01G287200.4	Wheat	mitochondrion	38.9	29.61
KXG26174	Sorghum	mitochondrion	38.04	29.2
TraesCS2B01G305800.6	Wheat	mitochondrion	38.62	28.88
Zm00001d011253_P003	Maize	peroxisome	19.02	28.57
PGSC0003DMT400027641	Potato	cytosol	31.7	27.36
PGSC0003DMT400063659	Potato	cytosol, plastid	35.73	25.67
Zm00001d025300_P007	Maize	mitochondrion	32.56	24.94
Zm00001d043522_P002	Maize	cytosol	14.7	22.67
Zm00001d012278_P001	Maize	cytosol, peroxisome, plasma membrane	9.51	14.86
Zm00001d025039_P001	Maize	cytosol	9.8	14.78
PGSC0003DMT400027640	Potato	cytosol	11.82	10.62

Protein Annotations

EnsemblPlants:PGSC0003DMT400036737	EnsemblPlantsGene:PGSC0003DMG400014170	Gene3D:2.60.40.10	Gene3D:3.10.580.10	InterPro:AMPK1_CBM	InterPro:CBS_dom
InterPro:IPR000644	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Ig_E-set	PANTHER:PTHR13780	PANTHER:PTHR13780:SF92
PFAM:PF00571	PFAM:PF16561	PFscan:PS51371	PGSC:PGSC0003DMG400014170	SMART:SM00116	SUPFAM:SSF54631
SUPFAM:SSF81296	UniParc:UPI000295A9E7	UniProt:M1B454	MapMan:18.4.5.1.4	MapMan:27.3.1.4	:

Description

AMP-activated protein kinase, gamma regulatory subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400014170]

Coordinates

chr3:+:57671658..57676319

Molecular Weight (calculated)

38987.1 Da

IEP (calculated)

5.788

GRAVY (calculated)

0.027

Length

347 amino acids

Sequence
(BLAST)

001: MQYKFLVDGI WQVDQDQLCV QDEYGAINNL VFVKESVSMP STLIREDAQS KLVSGFTSST HLEVFALDTE VAVKQAFHIM YEQRLAVMPL WDGQNAMISG
101: MLTAADFILI LLKLQESHPM LTHDELEMHT ISAWKYGKFQ LQAEVSGAMI PPNRRVLQAG PDESLKDVAL TLLQNKISAV PVLHSSEDGS SSQLLHTACL
201: AGILNHICRH FRRSLEYLPI VQQPVGNLPF GTWTREVGGR ASSRVLLTLH SGDLLSSALK LLIEGEISSI PIVDDNGALI NVYSRSDITS LARGNVYARF
301: RLDQMIMTQV LDEASRDRCR TCTRFDSLYR IMEVLSDPSL YRFFFPF

Best Arabidopsis Sequence Match ( AT1G09020.1 )
(BLAST)

001: MFGSTLDSSR GNSAASGQLL TPTRFVWPYG GRRVFLSGSF TRWTEHVPMS PLEGCPTVFQ VICNLTPGYH QYKFFVDGEW RHDEHQPFVS GNGGVVNTIF
101: ITGPDMVPAG FSPETLGRSN MDVDDVFLRT ADPSQEAVPR MSGVDLELSR HRISVLLSTR TAYELLPESG KVIALDVNLP VKQAFHILYE QGIPLAPLWD
201: FGKGQFVGVL GPLDFILILR ELGTHGSNLT EEELETHTIA AWKEGKAHIS RQYDGSGRPY PRPLVQVGPY DNLKDVALKI LQNKVAAVPV IYSSLQDGSY
301: PQLLHLASLS GILKCICRYF RHSSSSLPIL QQPICSIPLG TWVPRIGESS SKPLATLRPH ASLGSALALL VQAEVSSIPV VDDNDSLIDI YSRSDITALA
401: KDKAYAQIHL DDMTVHQALQ LGQDASPPYG IFNGQRCHMC LRSDSLVKVM ERLANPGVRR LVIVEAGSKR VEGIISLSDV FQFLLGL

Arabidopsis Description

SNF4Sucrose nonfermenting 4-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q944A6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.