Factsheet for PGSC0003DMT400063659

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g099280.2.1	Tomato	plastid	97.93	97.93
VIT_14s0128g00890.t01	Wine grape	cytosol	80.12	80.29
KRG96825	Soybean	cytosol	69.98	70.71
KRH68539	Soybean	cytosol	69.36	70.08
KRG92868	Soybean	cytosol, plastid	66.25	65.84
KRH33916	Soybean	cytosol	31.47	64.14
GSMUA_AchrUn_...	Banana	cytosol, nucleus, peroxisome	23.6	58.46
PGSC0003DMT400027641	Potato	cytosol	45.76	54.98
PGSC0003DMT400027640	Potato	cytosol	30.23	37.82
PGSC0003DMT400036737	Potato	cytosol	25.67	35.73

Protein Annotations

EntrezGene:102593769	MapMan:18.4.5.1.4	Gene3D:2.60.40.10	MapMan:27.3.1.4	Gene3D:3.10.580.10	InterPro:AMPK1_CBM
InterPro:CBS_dom	GO:GO:0000003	GO:GO:0000266	GO:GO:0003674	GO:GO:0003824	GO:GO:0004674
GO:GO:0006464	GO:GO:0006810	GO:GO:0006950	GO:GO:0007154	GO:GO:0008150	GO:GO:0008152
GO:GO:0009605	GO:GO:0009856	GO:GO:0009859	GO:GO:0009875	GO:GO:0009987	GO:GO:0009991
GO:GO:0016043	GO:GO:0016301	GO:GO:0016559	GO:GO:0016740	GO:GO:0019538	GO:GO:0019887
GO:GO:0030234	GO:GO:0042149	GO:GO:0045859	GO:GO:0046777	GO:GO:2000377	InterPro:IPR000644
InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Ig_E-set	UniProt:M1CAZ6	PFAM:PF00571	PFAM:PF16561
EnsemblPlantsGene:PGSC0003DMG402024742	PGSC:PGSC0003DMG402024742	EnsemblPlants:PGSC0003DMT400063659	PFscan:PS51371	PANTHER:PTHR13780	PANTHER:PTHR13780:SF92
SMART:SM00116	SUPFAM:SSF54631	SUPFAM:SSF81296	UniParc:UPI000296CF3F	RefSeq:XP_006344633.1	:

Description

AMP-activated protein kinase, gamma regulatory subunit [Source:PGSC_GENE;Acc:PGSC0003DMG402024742]

Coordinates

chr1:-:77060469..77076235

Molecular Weight (calculated)

53189.1 Da

IEP (calculated)

6.607

GRAVY (calculated)

0.018

Length

483 amino acids

Sequence
(BLAST)

001: MFGSGSDSGQ NHTGVAGTVL MPTRFVWPYG GRRVLLSGSF TRWQDHITMS PMEGCPTVFQ VVCNLTPGYH QYKFFVDGEW RHDERQPVVS GNYGVVNTIF
101: LPRESDAIPE LFSPDVPVGS NMDVDNDFLR LDAVPQISQA EIELSRQRIS AFLSTHTAYE LLPESGKVIA LDVNLPVKQA FHVLYEQGIS VAPLWDFFKG
201: QFVGVLTAID FILILMELGN HGSNLTEEEL ETHSISAWKG GKLRINRQID CNLNSYSRSL VHGGPYDSLK DLALRFLQNK VSTLPIIHSS SPDGSFPQLL
301: HLATLSGILK CICRHFKHSS SSLPILQQPI CSIPIGTWVP KIGESSGKAI AMLRPNASLG AALSLLVQAE VSAIPIVDDN DSLLDIYCRS DITALAKDRA
401: YAQIRLDELS IHQAIQLGQD ASSPHGLFNG QRCQMCLRSD PLHKVMERLA VPGARRLVIV EAGSKRVEGI ISVTDVFRFL LGC

Best Arabidopsis Sequence Match ( AT1G09020.1 )
(BLAST)

001: MFGSTLDSSR GNSAASGQLL TPTRFVWPYG GRRVFLSGSF TRWTEHVPMS PLEGCPTVFQ VICNLTPGYH QYKFFVDGEW RHDEHQPFVS GNGGVVNTIF
101: ITGPDMVPAG FSPETLGRSN MDVDDVFLRT ADPSQEAVPR MSGVDLELSR HRISVLLSTR TAYELLPESG KVIALDVNLP VKQAFHILYE QGIPLAPLWD
201: FGKGQFVGVL GPLDFILILR ELGTHGSNLT EEELETHTIA AWKEGKAHIS RQYDGSGRPY PRPLVQVGPY DNLKDVALKI LQNKVAAVPV IYSSLQDGSY
301: PQLLHLASLS GILKCICRYF RHSSSSLPIL QQPICSIPLG TWVPRIGESS SKPLATLRPH ASLGSALALL VQAEVSSIPV VDDNDSLIDI YSRSDITALA
401: KDKAYAQIHL DDMTVHQALQ LGQDASPPYG IFNGQRCHMC LRSDSLVKVM ERLANPGVRR LVIVEAGSKR VEGIISLSDV FQFLLGL

Arabidopsis Description

SNF4Sucrose nonfermenting 4-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q944A6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.