Factsheet for VIT_14s0128g00890.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_13s0067g00260.t01
VIT_14s0108g01230.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09020.1	VIT_13s0067g00260.t01	AT2G40000.1	17028154
AT1G09020.1	VIT_14s0108g01230.t01	AT3G29160.1	17028154
AT1G09020.1	VIT_13s0067g00260.t01	AT3G55840.1	17028154

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400063659	Potato	cytosol, plastid	80.29	80.12
Solyc01g099280.2.1	Tomato	plastid	79.46	79.3
AT1G09020.1	Thale cress	cytosol, plastid	79.88	79.06
CDY31116	Canola	plastid	78.22	78.22
Bra030752.1-P	Field mustard	plastid	61.0	77.57
CDX95016	Canola	plastid	77.39	77.23
CDY32146	Canola	plastid	77.18	77.18
Bra018586.1-P	Field mustard	plastid	70.12	76.99
CDY06344	Canola	mitochondrion, plastid	76.76	76.76
CDX93522	Canola	plastid	76.97	76.65
CDY22651	Canola	mitochondrion, plastid	76.56	76.56
Bra031654.1-P	Field mustard	plastid	75.31	74.39
VIT_05s0020g01580.t01	Wine grape	cytosol	75.31	73.93
KRG96825	Soybean	cytosol	71.99	72.59
KRH68539	Soybean	cytosol	71.58	72.18
KRG92868	Soybean	cytosol, plastid	70.95	70.37
KRH33916	Soybean	cytosol	33.61	68.35
GSMUA_AchrUn_...	Banana	cytosol, nucleus, peroxisome	26.35	65.13

Protein Annotations

EntrezGene:100252910	wikigene:100252910	MapMan:18.4.5.1.4	Gene3D:2.60.40.10	MapMan:27.3.1.4	Gene3D:3.10.580.10
InterPro:AMPK1_CBM	ProteinID:CBI36807	ProteinID:CBI36807.3	InterPro:CBS_dom	UniProt:D7U241	EMBL:FN596501
GO:GO:0000003	GO:GO:0000266	GO:GO:0003674	GO:GO:0003824	GO:GO:0004674	GO:GO:0006464
GO:GO:0006810	GO:GO:0006950	GO:GO:0007154	GO:GO:0008150	GO:GO:0008152	GO:GO:0009605
GO:GO:0009856	GO:GO:0009859	GO:GO:0009875	GO:GO:0009987	GO:GO:0009991	GO:GO:0016043
GO:GO:0016301	GO:GO:0016559	GO:GO:0016740	GO:GO:0019538	GO:GO:0019887	GO:GO:0030234
GO:GO:0042149	GO:GO:0045859	GO:GO:0046777	GO:GO:2000377	InterPro:IPR000644	InterPro:IPR013783
InterPro:Ig-like_fold	InterPro:Ig_E-set	EntrezGene:LOC100252910	wikigene:LOC100252910	PFAM:PF00571	PFAM:PF16561
PFscan:PS51371	PANTHER:PTHR13780	PANTHER:PTHR13780:SF92	SMART:SM00116	SUPFAM:SSF54631	SUPFAM:SSF81296
TIGR:TC58620	TIGR:TC66762	UniParc:UPI0001BE4A48	ArrayExpress:VIT_14s0128g00890	EnsemblPlantsGene:VIT_14s0128g00890	EnsemblPlants:VIT_14s0128g00890.t01
RefSeq:XP_002284480	RefSeq:XP_002284480.1	RefSeq:XP_003633645	RefSeq:XP_003633645.1	:	:

Description

No Description!

Coordinates

chr14:-:3423960..3440587

Molecular Weight (calculated)

53191.9 Da

IEP (calculated)

6.506

GRAVY (calculated)

-0.035

Length

482 amino acids

Sequence
(BLAST)

001: MFVSGAESGH ENSAIPGTVL IPTRFVWPYG GRRVLLSGSF TRWSEHIPMS PIEGCPTVFQ VIWSLAPGYH QYKFFVDGEW RHDEHQPFVS GNYGVVNTIF
101: LPREPDVVPA VFSPDTPGGS NMDLDNDPFP RGEVIPRISE ADLEVSRHRV SEFLSTHIAY ELLPESGKVI ALDVNLPVKQ AFHTLYEQGI PVAPLWDFCK
201: GQFVGVLSAL DFILILRELG NHGSNLTEEE LETHTISAWK EGKLHLRQID GSGRLCPRHL VHAGPYDSLK DVTLKILQNK VATVPIIHSA SQDGSFPQLL
301: HLASLSGILK CICRHFRHSS SSLPILQQPI CSIPVGTWVP KIGESNGQPF AMLRPNASLG AALSLLVQAE VSSIPIVDDN DSLLDIYSRS DITALAKDRA
401: YAQIHLDNMS IHQALQLGQD ANSPYGFISG QRCQMCLRSD PLHKVMERLA NPGVRRLVIV EAGSKRVEGV ISLSDVFRFL LG

Best Arabidopsis Sequence Match ( AT1G09020.1 )
(BLAST)

001: MFGSTLDSSR GNSAASGQLL TPTRFVWPYG GRRVFLSGSF TRWTEHVPMS PLEGCPTVFQ VICNLTPGYH QYKFFVDGEW RHDEHQPFVS GNGGVVNTIF
101: ITGPDMVPAG FSPETLGRSN MDVDDVFLRT ADPSQEAVPR MSGVDLELSR HRISVLLSTR TAYELLPESG KVIALDVNLP VKQAFHILYE QGIPLAPLWD
201: FGKGQFVGVL GPLDFILILR ELGTHGSNLT EEELETHTIA AWKEGKAHIS RQYDGSGRPY PRPLVQVGPY DNLKDVALKI LQNKVAAVPV IYSSLQDGSY
301: PQLLHLASLS GILKCICRYF RHSSSSLPIL QQPICSIPLG TWVPRIGESS SKPLATLRPH ASLGSALALL VQAEVSSIPV VDDNDSLIDI YSRSDITALA
401: KDKAYAQIHL DDMTVHQALQ LGQDASPPYG IFNGQRCHMC LRSDSLVKVM ERLANPGVRR LVIVEAGSKR VEGIISLSDV FQFLLGL

Arabidopsis Description

SNF4Sucrose nonfermenting 4-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q944A6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.