Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06344 | Canola | mitochondrion, plastid | 92.4 | 93.36 |
| CDX93522 | Canola | plastid | 92.61 | 93.18 |
| CDX95016 | Canola | plastid | 92.4 | 93.17 |
| Bra018586.1-P | Field mustard | plastid | 83.78 | 92.94 |
| CDY22651 | Canola | mitochondrion, plastid | 91.79 | 92.74 |
| CDY31116 | Canola | plastid | 91.79 | 92.74 |
| CDY32146 | Canola | plastid | 91.58 | 92.53 |
| Bra030752.1-P | Field mustard | plastid | 71.25 | 91.56 |
| Bra031654.1-P | Field mustard | plastid | 90.76 | 90.57 |
| VIT_14s0128g00890.t01 | Wine grape | cytosol | 79.06 | 79.88 |
| Solyc01g099280.2.1 | Tomato | plastid | 73.31 | 73.91 |
| KRG96825 | Soybean | cytosol | 70.23 | 71.55 |
| KRH68539 | Soybean | cytosol | 69.2 | 70.5 |
| KRH12134 | Soybean | nucleus | 70.43 | 69.86 |
| KRH37135 | Soybean | cytosol | 69.82 | 69.11 |
| VIT_05s0020g01580.t01 | Wine grape | cytosol | 69.2 | 68.64 |
| KRH50894 | Soybean | nucleus | 67.76 | 68.46 |
| KRH02229 | Soybean | nucleus | 66.74 | 67.43 |
| KRG92868 | Soybean | cytosol, plastid | 66.32 | 66.46 |
| Solyc01g067590.2.1 | Tomato | cytosol | 65.3 | 65.98 |
| Zm00001d012817_P002 | Maize | cytosol | 66.12 | 64.92 |
| EER93064 | Sorghum | cytosol | 65.71 | 64.52 |
| KRH33916 | Soybean | cytosol | 31.21 | 64.14 |
| TraesCS5B01G559100.1 | Wheat | cytosol, plastid | 65.3 | 63.98 |
| TraesCS4A01G320000.1 | Wheat | cytosol, nucleus, peroxisome, plastid | 65.09 | 63.78 |
| TraesCS5D01G565200.3 | Wheat | cytosol, nucleus, peroxisome, plastid | 65.09 | 63.78 |
| HORVU5Hr1G124410.12 | Barley | plastid | 64.68 | 63.38 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, peroxisome | 24.44 | 61.03 |
| Zm00001d034896_P003 | Maize | golgi, plasma membrane | 60.99 | 55.0 |
| GSMUA_AchrUn_... | Banana | cytosol | 15.81 | 47.53 |
| PGSC0003DMT400027640 | Potato | cytosol | 28.54 | 36.01 |
| Os04t0401300-01 | Rice | mitochondrion | 1.44 | 5.6 |
Protein Annotations
| MapMan:18.4.5.1.4 | Gene3D:2.60.40.10 | MapMan:27.3.1.4 | Gene3D:3.10.580.10 | EntrezGene:837423 | UniProt:A0A178W6I0 |
| ProteinID:AAB70406.1 | ProteinID:AEE28383.1 | EMBL:AF250335 | EMBL:AF439826 | InterPro:AMPK1_CBM | ArrayExpress:AT1G09020 |
| EnsemblPlantsGene:AT1G09020 | RefSeq:AT1G09020 | TAIR:AT1G09020 | RefSeq:AT1G09020-TAIR-G | EnsemblPlants:AT1G09020.1 | TAIR:AT1G09020.1 |
| EMBL:BT000625 | InterPro:CBS_dom | EMBL:DQ132632 | EMBL:DQ132633 | GO:GO:0000003 | GO:GO:0000266 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005975 | GO:GO:0006464 |
| GO:GO:0006810 | GO:GO:0006950 | GO:GO:0007154 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009605 |
| GO:GO:0009856 | GO:GO:0009859 | GO:GO:0009875 | GO:GO:0009987 | GO:GO:0009991 | GO:GO:0016043 |
| GO:GO:0016301 | GO:GO:0016559 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0019887 | GO:GO:0030234 |
| GO:GO:0030295 | GO:GO:0032147 | GO:GO:0042149 | GO:GO:0045859 | GO:GO:0046777 | GO:GO:2000377 |
| InterPro:IPR000644 | InterPro:IPR013783 | InterPro:Ig-like_fold | InterPro:Ig_E-set | RefSeq:NP_563834.1 | ProteinID:OAP14087.1 |
| PFAM:PF00571 | PFAM:PF16561 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS51371 | PANTHER:PTHR13780 |
| PANTHER:PTHR13780:SF92 | UniProt:Q944A6 | SMART:SM00116 | Symbol:SNF4 | SUPFAM:SSF54631 | SUPFAM:SSF81296 |
| UniParc:UPI00000AC111 | : | : | : | : | : |
Description
SNF4Sucrose nonfermenting 4-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q944A6]
Coordinates
chr1:-:2899776..2904862
Molecular Weight (calculated)
53469.3 Da
IEP (calculated)
6.674
GRAVY (calculated)
-0.022
Length
487 amino acids
Sequence
(BLAST)
(BLAST)
001: MFGSTLDSSR GNSAASGQLL TPTRFVWPYG GRRVFLSGSF TRWTEHVPMS PLEGCPTVFQ VICNLTPGYH QYKFFVDGEW RHDEHQPFVS GNGGVVNTIF
101: ITGPDMVPAG FSPETLGRSN MDVDDVFLRT ADPSQEAVPR MSGVDLELSR HRISVLLSTR TAYELLPESG KVIALDVNLP VKQAFHILYE QGIPLAPLWD
201: FGKGQFVGVL GPLDFILILR ELGTHGSNLT EEELETHTIA AWKEGKAHIS RQYDGSGRPY PRPLVQVGPY DNLKDVALKI LQNKVAAVPV IYSSLQDGSY
301: PQLLHLASLS GILKCICRYF RHSSSSLPIL QQPICSIPLG TWVPRIGESS SKPLATLRPH ASLGSALALL VQAEVSSIPV VDDNDSLIDI YSRSDITALA
401: KDKAYAQIHL DDMTVHQALQ LGQDASPPYG IFNGQRCHMC LRSDSLVKVM ERLANPGVRR LVIVEAGSKR VEGIISLSDV FQFLLGL
101: ITGPDMVPAG FSPETLGRSN MDVDDVFLRT ADPSQEAVPR MSGVDLELSR HRISVLLSTR TAYELLPESG KVIALDVNLP VKQAFHILYE QGIPLAPLWD
201: FGKGQFVGVL GPLDFILILR ELGTHGSNLT EEELETHTIA AWKEGKAHIS RQYDGSGRPY PRPLVQVGPY DNLKDVALKI LQNKVAAVPV IYSSLQDGSY
301: PQLLHLASLS GILKCICRYF RHSSSSLPIL QQPICSIPLG TWVPRIGESS SKPLATLRPH ASLGSALALL VQAEVSSIPV VDDNDSLIDI YSRSDITALA
401: KDKAYAQIHL DDMTVHQALQ LGQDASPPYG IFNGQRCHMC LRSDSLVKVM ERLANPGVRR LVIVEAGSKR VEGIISLSDV FQFLLGL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.