CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97765
KRH01228
KRH14977
KRH18445
KRH31120
KRH44934
KRH73164

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09020.1	KRG97765	AT2G40000.1	17028154
AT1G09020.1	KRH14977	AT2G40000.1	17028154
AT1G09020.1	KRH31120	AT2G40000.1	17028154
AT1G09020.1	KRH73164	AT2G40000.1	17028154
AT1G09020.1	KRH01228	AT3G29160.1	17028154
AT1G09020.1	KRH18445	AT3G29160.1	17028154
AT1G09020.1	KRH44934	AT3G29160.1	17028154
AT1G09020.1	KRG97765	AT3G55840.1	17028154
AT1G09020.1	KRH14977	AT3G55840.1	17028154
AT1G09020.1	KRH31120	AT3G55840.1	17028154
AT1G09020.1	KRH73164	AT3G55840.1	17028154

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH37135	Soybean	cytosol	97.35	97.15
KRH50894	Soybean	nucleus	82.08	83.61
KRH02229	Soybean	nucleus	82.08	83.61
VIT_05s0020g01580.t01	Wine grape	cytosol	77.19	77.19
CDY32146	Canola	plastid	69.25	70.54
AT1G09020.1	Thale cress	cytosol, plastid	69.86	70.43
Bra030752.1-P	Field mustard	plastid	54.18	70.18
CDY31116	Canola	plastid	68.84	70.12
Bra018586.1-P	Field mustard	plastid	62.53	69.93
Solyc01g067590.2.1	Tomato	cytosol	68.64	69.92
CDY06344	Canola	mitochondrion, plastid	68.23	69.5
CDX95016	Canola	plastid	68.02	69.15
CDX93522	Canola	plastid	68.02	69.01
CDY22651	Canola	mitochondrion, plastid	67.62	68.88
Bra031654.1-P	Field mustard	plastid	66.8	67.21
Os03t0856400-01	Rice	plasma membrane	66.19	65.92
KRG96825	Soybean	cytosol	64.15	65.9
KRH68539	Soybean	cytosol	64.15	65.9
TraesCS4A01G320000.1	Wheat	cytosol, nucleus, peroxisome, plastid	66.19	65.39
TraesCS5D01G565200.3	Wheat	cytosol, nucleus, peroxisome, plastid	66.19	65.39
TraesCS5B01G559100.1	Wheat	cytosol, plastid	65.99	65.19
KRG92868	Soybean	cytosol, plastid	64.36	65.02
Zm00001d012817_P002	Maize	cytosol	65.38	64.72
HORVU5Hr1G124410.12	Barley	plastid	64.97	64.19
EER93064	Sorghum	cytosol	64.77	64.11
KRH33916	Soybean	cytosol	28.92	59.92
PGSC0003DMT400027641	Potato	cytosol	48.07	58.71
Zm00001d034896_P003	Maize	golgi, plasma membrane	61.1	55.56
GSMUA_AchrUn_...	Banana	cytosol	15.48	46.91

Protein Annotations

EntrezGene:100785692	MapMan:18.4.5.1.4	Gene3D:2.60.40.10	MapMan:27.3.1.4	Gene3D:3.10.580.10	EMBL:ACUP02009269
InterPro:AMPK1_CBM	InterPro:CBS_dom	EnsemblPlantsGene:GLYMA_15G154300	UniProt:I1MGR7	InterPro:IPR000644	InterPro:IPR013783
InterPro:Ig-like_fold	InterPro:Ig_E-set	EnsemblPlants:KRH12134	ProteinID:KRH12134	ProteinID:KRH12134.1	PFAM:PF00571
PFAM:PF16561	PFscan:PS51371	PANTHER:PTHR13780	PANTHER:PTHR13780:SF92	SMART:SM00116	SUPFAM:SSF54631
SUPFAM:SSF81296	UniParc:UPI000233BFBD	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:+:12846649..12859201

Molecular Weight (calculated)

54832.1 Da

IEP (calculated)

6.609

GRAVY (calculated)

-0.037

Length

491 amino acids

Sequence
(BLAST)

001: MFGQSMDSAR NAGGVAGTVL IPMRFVWPYG GRSVFLSGSF TRWLELLPMS PVEGCPTVFQ VIYNLPPGYH QYKFFVDGEW RHDEHQPYVP GDYGIVNTVF
101: LATDPNYIPV LPPDVASGNS MDVDNDAFRR MVRLTDGTLS EVLPRISDTD VQISRQRISA FLSSHTAYEL LPESGKVVAL DVDLPVKQAF HILHEQGIFM
201: APLWDFCKGQ FVGVLSALDF ILILRELGNH GSNLTEEELE THTISAWKEG KSYLNRQNNG HGTMFSRRFI HAGPYDNLKD IAMKILQKEV STVPIIHSSS
301: EDASFPQLLH LASLSGILKC ICRYFRHCSS SLPVLQLPIC AIPVGTWVPK IGESNRQPLA MLRPTASLAS ALNLLVQAQV SSIPIVDDND SLLDIYCRSD
401: ITALAKNRAY AHINLDEMTV HQALQLGQDA YSPYELRSQR CQMCLRSDPL HKVMERLANP GVRRLVIVEA GSKRVEGIVS LRDIFKFFIG D

Best Arabidopsis Sequence Match ( AT1G09020.1 )
(BLAST)

001: MFGSTLDSSR GNSAASGQLL TPTRFVWPYG GRRVFLSGSF TRWTEHVPMS PLEGCPTVFQ VICNLTPGYH QYKFFVDGEW RHDEHQPFVS GNGGVVNTIF
101: ITGPDMVPAG FSPETLGRSN MDVDDVFLRT ADPSQEAVPR MSGVDLELSR HRISVLLSTR TAYELLPESG KVIALDVNLP VKQAFHILYE QGIPLAPLWD
201: FGKGQFVGVL GPLDFILILR ELGTHGSNLT EEELETHTIA AWKEGKAHIS RQYDGSGRPY PRPLVQVGPY DNLKDVALKI LQNKVAAVPV IYSSLQDGSY
301: PQLLHLASLS GILKCICRYF RHSSSSLPIL QQPICSIPLG TWVPRIGESS SKPLATLRPH ASLGSALALL VQAEVSSIPV VDDNDSLIDI YSRSDITALA
401: KDKAYAQIHL DDMTVHQALQ LGQDASPPYG IFNGQRCHMC LRSDSLVKVM ERLANPGVRR LVIVEAGSKR VEGIISLSDV FQFLLGL

Arabidopsis Description

SNF4Sucrose nonfermenting 4-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q944A6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.