CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
vacuole 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92868
KRG96825
KRG97765
KRH01780
KRH02229
KRH12134
KRH14977
KRH31120
KRH33916
KRH37135
KRH46912
KRH50894
KRH52586
KRH61926
KRH68539
KRH73164

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G40000.1	KRG92868	AT1G09020.1	17028154
AT2G40000.1	KRG96825	AT1G09020.1	17028154
AT2G40000.1	KRH02229	AT1G09020.1	17028154
AT2G40000.1	KRH12134	AT1G09020.1	17028154
AT2G40000.1	KRH33916	AT1G09020.1	17028154
AT2G40000.1	KRH37135	AT1G09020.1	17028154
AT2G40000.1	KRH50894	AT1G09020.1	17028154
AT2G40000.1	KRH68539	AT1G09020.1	17028154
AT3G55840.1	KRG92868	AT1G09020.1	17028154
AT3G55840.1	KRG96825	AT1G09020.1	17028154
AT3G55840.1	KRH02229	AT1G09020.1	17028154
AT3G55840.1	KRH12134	AT1G09020.1	17028154
AT3G55840.1	KRH33916	AT1G09020.1	17028154
AT3G55840.1	KRH37135	AT1G09020.1	17028154
AT3G55840.1	KRH50894	AT1G09020.1	17028154
AT3G55840.1	KRH68539	AT1G09020.1	17028154
AT3G55840.1	KRH52586	AT1G71230.1	21798944
AT3G55840.1	KRH61926	AT1G71230.1	21798944
AT3G55840.1	KRG97765	AT3G55840.1	21798944
AT3G55840.1	KRH14977	AT3G55840.1	21798944
AT3G55840.1	KRH31120	AT3G55840.1	21798944
AT3G55840.1	KRH73164	AT3G55840.1	21798944
AT3G55840.1	KRH01780	AT5G16080.1	21798944
AT3G55840.1	KRH46912	AT5G16080.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73164	Soybean	cytosol	79.83	85.13
KRH31120	Soybean	nucleus	62.66	64.18
KRG97765	Soybean	plastid	60.73	62.75
CDY20507	Canola	cytosol	22.75	53.81
CDY04614	Canola	cytosol	9.44	53.66
CDX68585	Canola	cytosol	9.44	53.66
Bra017040.1-P	Field mustard	cytosol	48.28	53.44
CDY07047	Canola	cytosol	48.07	53.21
CDY60990	Canola	cytosol, nucleus, plastid, vacuole	48.07	52.96
CDY24933	Canola	cytosol	47.85	52.84
Bra000158.1-P	Field mustard	cytosol, nucleus, vacuole	47.85	52.59
CDY70017	Canola	cytosol	47.0	52.14
AT2G40000.1	Thale cress	cytosol	48.5	51.95
CDY61713	Canola	cytosol	47.0	51.9
CDX74813	Canola	cytosol	46.57	51.79
CDX72197	Canola	cytosol	47.0	51.53
Bra007195.1-P	Field mustard	cytosol	47.0	51.53
Bra004994.1-P	Field mustard	cytosol	46.14	51.44
CDY27261	Canola	cytosol	46.78	51.29
CDX72167	Canola	cytosol	9.01	51.22
AT3G55840.1	Thale cress	cytosol, plastid	46.57	50.7
VIT_13s0067g00260.t01	Wine grape	cytosol, nucleus, plastid, vacuole	50.64	49.58
GSMUA_Achr5P28920_001	Banana	cytosol	39.91	45.93
GSMUA_Achr10P...	Banana	nucleus	41.63	44.19
Zm00001d042811_P001	Maize	cytosol	42.27	42.09
GSMUA_Achr11P...	Banana	plastid	42.7	42.07
KXG33721	Sorghum	plastid	42.06	41.79
Zm00001d012321_P001	Maize	plastid	41.42	40.72
TraesCS3D01G361800.1	Wheat	cytosol	40.77	40.69
Os01t0855600-01	Rice	plasma membrane	41.2	40.51
HORVU3Hr1G084830.1	Barley	cytosol	40.34	40.26
TraesCS3A01G368800.1	Wheat	cytosol	40.34	40.26
TraesCS3B01G400800.1	Wheat	cytosol, mitochondrion, plastid	39.48	39.4
HORVU3Hr1G111690.1	Barley	cytosol	11.37	39.26

Protein Annotations

KEGG:00380+1.13.11.11	EntrezGene:100778560	MapMan:35.1	EMBL:ACUP02008548	EnsemblPlantsGene:GLYMA_14G061200	GO:GO:0003674
GO:GO:0005488	GO:GO:0006950	GO:GO:0006952	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0019441	GO:GO:0020037	GO:GO:0046872	InterPro:HSPRO1/HSPRO2	InterPro:HSPRO1_N
InterPro:Hs1pro-1_C	UniProt:I1M7W2	EnsemblPlants:KRH14977	ProteinID:KRH14977	ProteinID:KRH14977.1	PFAM:PF07014
PFAM:PF07231	PANTHER:PTHR34795	SUPFAM:SSF140959	InterPro:Trp/Indoleamine_2_3_dOase-like	UniParc:UPI000296F8CF	:

Description

hypothetical protein

Coordinates

chr14:+:4954181..4955914

Molecular Weight (calculated)

53529.5 Da

IEP (calculated)

6.262

GRAVY (calculated)

-0.325

Length

466 amino acids

Sequence
(BLAST)

001: MCVSLSYKYT TIFHFLFKSN SPNMVDLDWQ TKMVHSNMPP KSPKLSLPDN NIPIPLRQND ITAASSPICA AYDNYLRLPE LRALWASNDF PNWANEPILK
101: PTLHALEITF RLLATVLSDP RPYINKREWT RRVESLATAQ IQIIAMLCED EEENPETRGT TPPVSDINGF IAQSRSYSEE SLLPRLATWH KSKDVARRIL
201: DSVEYQMMRC TYTLGLGEAN LAGKKIFLYD AVCRPSEIHS LETTPFDYVG NCENKTLHAT QQIAECWTRA VRKLLERVAE SVERKTLEKA ARECHAVERI
301: WKLLTEVEDV HVMMDPEDFL RLKKELGMMR NCGEMVAFCF RSRELVEVAR MCRDLRQKVP EILEVEVDPT GGPGMMEAAM KVYSEKEKRN GFEKVHVLQG
401: MQAIEVAMKR FFYAYKQVVA VMMGSSEADN GFTQIFLEPT YFPSLDAAKT FLAYYWENNN QNVVPC

Best Arabidopsis Sequence Match ( AT2G40000.1 )
(BLAST)

001: MVDMDWKRKM VSSDLPNSPK LSSKLHVTIP SPFKIVPVSS PISCSAPALC SAYELYLRLP ELRKLWSSRD FPQWTSEPIL KPALQALEIS FRLVFAVCSD
101: TRPYINHREW NRRLDSLITK QIQLVAAICE DEEEEGISAE APVGGGRSSL SLLPQLATWR RSEALGKKIL YTIDNEMSRC KYTLGLGEQN IAGKPNLRYD
201: AICRPNEIYS LKDNPYADHI DNHENQTLYI IHQILESWIY ASGNLLNRIV SSIEEEKFGK ASNDVYLLEK IWKILAEIED LHMLMDPEDF LKLKKQLQIK
301: STGKNDAFCF RSKGLVEMMK MSKDLRQKVP AVLAVEVDPT GGPRLQEAAM KLYARKTECD KIHLLQGMQA VEAAAKSFFF GYRQLVAAMM GSAEMNATAS
401: QESCDSLSQI FMEPTYFPSL DAAKTFLGEF WSHLG

Arabidopsis Description

HSPRO2Nematode resistance protein-like HSPRO2 [Source:UniProtKB/Swiss-Prot;Acc:O04203]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.