CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 1
vacuole 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX93522
CDX95016
CDY06344
CDY22651
CDY31116
CDY32146

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G40000.1	CDX93522	AT1G09020.1	17028154
AT2G40000.1	CDX95016	AT1G09020.1	17028154
AT2G40000.1	CDY06344	AT1G09020.1	17028154
AT2G40000.1	CDY22651	AT1G09020.1	17028154
AT2G40000.1	CDY31116	AT1G09020.1	17028154
AT2G40000.1	CDY32146	AT1G09020.1	17028154

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000158.1-P	Field mustard	cytosol, nucleus, vacuole	97.16	96.93
CDY24933	Canola	cytosol	95.27	95.5
CDY07047	Canola	cytosol	80.38	80.76
CDX68585	Canola	cytosol	15.6	80.49
CDY04614	Canola	cytosol	15.6	80.49
CDY61713	Canola	cytosol	80.14	80.33
AT2G40000.1	Thale cress	cytosol	81.56	79.31
CDY20507	Canola	cytosol	36.88	79.19
CDY70017	Canola	cytosol	78.25	78.81
CDX72167	Canola	cytosol	15.13	78.05
CDX74813	Canola	cytosol	77.31	78.04
CDY27261	Canola	cytosol	66.9	66.59
CDX72197	Canola	cytosol	66.43	66.12
VIT_13s0067g00260.t01	Wine grape	cytosol, nucleus, plastid, vacuole	60.99	54.2
KRG97765	Soybean	plastid	56.97	53.44
KRH31120	Soybean	nucleus	57.45	53.41
KRH73164	Soybean	cytosol	51.3	49.66
GSMUA_Achr10P...	Banana	nucleus	50.35	48.52
KRH14977	Soybean	plastid	52.96	48.07
GSMUA_Achr5P28920_001	Banana	cytosol	45.15	47.16
HORVU3Hr1G111690.1	Barley	cytosol	14.89	46.67
GSMUA_Achr11P...	Banana	plastid	50.83	45.45
HORVU3Hr1G084830.1	Barley	cytosol	47.99	43.47
TraesCS3D01G361800.1	Wheat	cytosol	47.99	43.47
TraesCS3A01G368800.1	Wheat	cytosol	47.75	43.25
Os01t0855600-01	Rice	plasma membrane	48.23	43.04
TraesCS3B01G400800.1	Wheat	cytosol, mitochondrion, plastid	47.28	42.83
KXG33721	Sorghum	plastid	47.28	42.64
Zm00001d042811_P001	Maize	cytosol	46.57	42.09
Zm00001d012321_P001	Maize	plastid	44.92	40.08

Protein Annotations

KEGG:00380+1.13.11.11	MapMan:35.1	GO:A0A078J7F9	UniProt:A0A078J7F9	EnsemblPlants:CDY60990	ProteinID:CDY60990
ProteinID:CDY60990.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0006950	GO:GO:0006952	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019441	GO:GO:0020037	GO:GO:0046872
EnsemblPlantsGene:GSBRNA2T00030379001	InterPro:HSPRO1/HSPRO2	InterPro:HSPRO1_N	InterPro:Hs1pro-1_C	PFAM:PF07014	PFAM:PF07231
PANTHER:PTHR34795	SUPFAM:SSF140959	InterPro:Trp/Indoleamine_2_3_dOase-like	UniParc:UPI0004EDBEAC	SEG:seg	:

Description

BnaA03g56550DBnaA03g56550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J7F9]

Coordinates

chrLK033943:+:16099..17469

Molecular Weight (calculated)

48265.9 Da

IEP (calculated)

6.080

GRAVY (calculated)

-0.358

Length

423 amino acids

Sequence
(BLAST)

001: MVDMDWKRKM VSSELSSKLH VTIPSPFKVP VSSPISCSAP AACSAYELYL RLPELKKLWS SREFPQWNDE PILKPALQAL EITFRLVSSV CSDTRPYTNH
101: REWNRRLDSF VTNQIQLIAS ICEVDDEEDE RSAPLGDKRS SLSLLPHLAT WRKSEALGRK ILCTIDNEMR RCKYTLGLGE QNVSNKPNLR YDAVCKPNEV
201: YSLKDNPYAD HIDNEENQTL YVLHQILESW IHASGNLLRR INTRIEEGRF GEAASDVYLV ERIWKLMAEI EDVHVLMDPE DFLKLKQQLQ IKSNGQNDAF
301: CFRSRGLVEM MKMTKDLREK VPAVLGVEVD PTGGPRLQEA VMRLYATKGD CDKVHLLQGM QAVEAAAKRF FFAYKQLVAV VMGSAETSQE SCDSLSQIFM
401: EPTYFPSLDA AKTFLGEFWS HLG

Best Arabidopsis Sequence Match ( AT2G40000.1 )
(BLAST)

001: MVDMDWKRKM VSSDLPNSPK LSSKLHVTIP SPFKIVPVSS PISCSAPALC SAYELYLRLP ELRKLWSSRD FPQWTSEPIL KPALQALEIS FRLVFAVCSD
101: TRPYINHREW NRRLDSLITK QIQLVAAICE DEEEEGISAE APVGGGRSSL SLLPQLATWR RSEALGKKIL YTIDNEMSRC KYTLGLGEQN IAGKPNLRYD
201: AICRPNEIYS LKDNPYADHI DNHENQTLYI IHQILESWIY ASGNLLNRIV SSIEEEKFGK ASNDVYLLEK IWKILAEIED LHMLMDPEDF LKLKKQLQIK
301: STGKNDAFCF RSKGLVEMMK MSKDLRQKVP AVLAVEVDPT GGPRLQEAAM KLYARKTECD KIHLLQGMQA VEAAAKSFFF GYRQLVAAMM GSAEMNATAS
401: QESCDSLSQI FMEPTYFPSL DAAKTFLGEF WSHLG

Arabidopsis Description

HSPRO2Nematode resistance protein-like HSPRO2 [Source:UniProtKB/Swiss-Prot;Acc:O04203]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.