CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
vacuole 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, vacuole
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	vacuole
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX93522
CDX95016
CDY06344
CDY22651
CDY31116
CDY32146

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G40000.1	CDX93522	AT1G09020.1	17028154
AT2G40000.1	CDX95016	AT1G09020.1	17028154
AT2G40000.1	CDY06344	AT1G09020.1	17028154
AT2G40000.1	CDY22651	AT1G09020.1	17028154
AT2G40000.1	CDY31116	AT1G09020.1	17028154
AT2G40000.1	CDY32146	AT1G09020.1	17028154

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07047	Canola	cytosol	96.45	96.67
CDY60990	Canola	cytosol, nucleus, plastid, vacuole	80.33	80.14
CDY24933	Canola	cytosol	79.62	79.62
AT2G40000.1	Thale cress	cytosol	79.86	77.47
CDY70017	Canola	cytosol	75.83	76.19
CDX74813	Canola	cytosol	74.17	74.7
CDY20507	Canola	cytosol	33.65	72.08
CDX68585	Canola	cytosol	13.74	70.73
CDY04614	Canola	cytosol	13.74	70.73
CDX72167	Canola	cytosol	13.51	69.51
CDX72197	Canola	cytosol	67.77	67.29
CDY27261	Canola	cytosol	67.3	66.82
VIT_13s0067g00260.t01	Wine grape	cytosol, nucleus, plastid, vacuole	59.0	52.31
KRG97765	Soybean	plastid	55.69	52.11
KRH31120	Soybean	nucleus	55.45	51.43
KRH73164	Soybean	cytosol	50.24	48.51
GSMUA_Achr10P...	Banana	nucleus	50.0	48.06
GSMUA_Achr5P28920_001	Banana	cytosol	45.97	47.9
KRH14977	Soybean	plastid	51.9	47.0
GSMUA_Achr11P...	Banana	plastid	50.0	44.61
HORVU3Hr1G111690.1	Barley	cytosol	13.27	41.48
TraesCS3D01G361800.1	Wheat	cytosol	44.55	40.26
KXG33721	Sorghum	plastid	44.55	40.09
HORVU3Hr1G084830.1	Barley	cytosol	44.31	40.04
TraesCS3A01G368800.1	Wheat	cytosol	44.08	39.83
Zm00001d042811_P001	Maize	cytosol	43.84	39.53
TraesCS3B01G400800.1	Wheat	cytosol, mitochondrion, plastid	43.6	39.4
Os01t0855600-01	Rice	plasma membrane	43.84	39.03
Zm00001d012321_P001	Maize	plastid	41.94	37.34

Protein Annotations

KEGG:00380+1.13.11.11	MapMan:35.1	GO:A0A078JC04	UniProt:A0A078JC04	EnsemblPlants:CDY61713	ProteinID:CDY61713
ProteinID:CDY61713.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0006950	GO:GO:0006952	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019441	GO:GO:0020037	GO:GO:0046872
EnsemblPlantsGene:GSBRNA2T00034257001	InterPro:HSPRO1/HSPRO2	InterPro:HSPRO1_N	InterPro:Hs1pro-1_C	PFAM:PF07014	PFAM:PF07231
PANTHER:PTHR34795	SUPFAM:SSF140959	InterPro:Trp/Indoleamine_2_3_dOase-like	UniParc:UPI0004EE6632	SEG:seg	:

Description

BnaC04g56750DBnaC04g56750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JC04]

Coordinates

chrLK034030:+:38304..39718

Molecular Weight (calculated)

48224.0 Da

IEP (calculated)

7.668

GRAVY (calculated)

-0.372

Length

422 amino acids

Sequence
(BLAST)

001: MVDTDWKNKM MSSESPKLSS KLHVTIPSPF KVVAVSSPIS CSAPAACSAY ELYLRLPELK NLWSSRDFPR WSNEPILKPS LQALEISFRL VLSVCSDARP
101: YINHREWNRR LDSLVTSQIQ LIASICEEED DQSAPVSDGR SSLSLLPQLA TWRKTESLGK KFLCTIDNEM RRCKYTLGLG EQNVSNKPNL RYDAVCKPKD
201: LYRLKDNPYA DHVDNDENQT LYVLHQILES WIHASLSLLN RIDQNINEER FGKASSDVYL LERIWRLMTE IEDLHILIDP EDFLKLKKQL QIKSTGKNDA
301: FCFRSRGLVE MTKMSKDLRQ RIPKILEVEV DPTGGPRLQE AAMRMYARKK GECDKIHLLQ GMQAVEGAAK SFFFAYKQLV AVMMGSSQVS CDSLSQIFME
401: PTYYPSLDAA KTFLGEFWGN LG

Best Arabidopsis Sequence Match ( AT2G40000.1 )
(BLAST)

001: MVDMDWKRKM VSSDLPNSPK LSSKLHVTIP SPFKIVPVSS PISCSAPALC SAYELYLRLP ELRKLWSSRD FPQWTSEPIL KPALQALEIS FRLVFAVCSD
101: TRPYINHREW NRRLDSLITK QIQLVAAICE DEEEEGISAE APVGGGRSSL SLLPQLATWR RSEALGKKIL YTIDNEMSRC KYTLGLGEQN IAGKPNLRYD
201: AICRPNEIYS LKDNPYADHI DNHENQTLYI IHQILESWIY ASGNLLNRIV SSIEEEKFGK ASNDVYLLEK IWKILAEIED LHMLMDPEDF LKLKKQLQIK
301: STGKNDAFCF RSKGLVEMMK MSKDLRQKVP AVLAVEVDPT GGPRLQEAAM KLYARKTECD KIHLLQGMQA VEAAAKSFFF GYRQLVAAMM GSAEMNATAS
401: QESCDSLSQI FMEPTYFPSL DAAKTFLGEF WSHLG

Arabidopsis Description

HSPRO2Nematode resistance protein-like HSPRO2 [Source:UniProtKB/Swiss-Prot;Acc:O04203]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.