Factsheet for TraesCS3B01G400800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

mitochondrion 2
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G504600.1
TraesCS2D01G505300.1
TraesCS3A01G368800.1
TraesCS3B01G400800.1
TraesCS3D01G361800.1
TraesCS4A01G085300.1
TraesCS4A01G320000.1
TraesCS4B01G218900.1
TraesCS4D01G219100.1
TraesCS5B01G559100.1
TraesCS5D01G565200.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G40000.1	TraesCS4A01G320000.1	AT1G09020.1	17028154
AT2G40000.1	TraesCS5B01G559100.1	AT1G09020.1	17028154
AT2G40000.1	TraesCS5D01G565200.3	AT1G09020.1	17028154
AT3G55840.1	TraesCS4A01G320000.1	AT1G09020.1	17028154
AT3G55840.1	TraesCS5B01G559100.1	AT1G09020.1	17028154
AT3G55840.1	TraesCS5D01G565200.3	AT1G09020.1	17028154
AT3G55840.1	TraesCS2A01G504600.1	AT1G71230.1	21798944
AT3G55840.1	TraesCS2D01G505300.1	AT1G71230.1	21798944
AT3G55840.1	TraesCS3A01G368800.1	AT3G55840.1	21798944
AT3G55840.1	TraesCS3B01G400800.1	AT3G55840.1	21798944
AT3G55840.1	TraesCS3D01G361800.1	AT3G55840.1	21798944
AT3G55840.1	TraesCS4A01G085300.1	AT5G16080.1	21798944
AT3G55840.1	TraesCS4B01G218900.1	AT5G16080.1	21798944
AT3G55840.1	TraesCS4D01G219100.1	AT5G16080.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G361800.1	Wheat	cytosol	97.0	97.0
TraesCS3A01G368800.1	Wheat	cytosol	96.36	96.36
KXG33721	Sorghum	plastid	83.73	83.37
HORVU3Hr1G111690.1	Barley	cytosol	23.77	82.22
Os01t0855600-01	Rice	plasma membrane	82.66	81.43
Zm00001d042811_P001	Maize	cytosol	81.16	80.98
Zm00001d012321_P001	Maize	plastid	77.94	76.79
GSMUA_Achr5P28920_001	Banana	cytosol	50.11	57.78
CDX68585	Canola	cytosol	10.06	57.32
CDY04614	Canola	cytosol	10.06	57.32
GSMUA_Achr10P...	Banana	nucleus	53.1	56.49
GSMUA_Achr11P...	Banana	plastid	56.32	55.6
CDX72167	Canola	cytosol	9.64	54.88
CDY20507	Canola	cytosol	23.13	54.82
VIT_13s0067g00260.t01	Wine grape	cytosol, nucleus, plastid, vacuole	53.32	52.31
Bra000158.1-P	Field mustard	cytosol, nucleus, vacuole	43.68	48.11
AT3G55840.1	Thale cress	cytosol, plastid	43.9	47.9
CDY24933	Canola	cytosol	43.04	47.63
CDY60990	Canola	cytosol, nucleus, plastid, vacuole	42.83	47.28
KRG97765	Soybean	plastid	44.97	46.56
CDY70017	Canola	cytosol	41.76	46.43
CDY27261	Canola	cytosol	42.18	46.35
AT2G40000.1	Thale cress	cytosol	43.04	46.21
CDX72197	Canola	cytosol	41.97	46.12
Bra007195.1-P	Field mustard	cytosol	41.97	46.12
Bra004994.1-P	Field mustard	cytosol	40.9	45.69
CDX74813	Canola	cytosol	40.9	45.58
KRH31120	Soybean	nucleus	44.33	45.49
Bra017040.1-P	Field mustard	cytosol	39.61	43.94
CDY07047	Canola	cytosol	39.4	43.71
CDY61713	Canola	cytosol	39.4	43.6
KRH73164	Soybean	cytosol	37.05	39.59
KRH14977	Soybean	plastid	39.4	39.48

Protein Annotations

KEGG:00380+1.13.11.11	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0006950	GO:GO:0006952
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019441	GO:GO:0020037
GO:GO:0046872	InterPro:HSPRO1/HSPRO2	InterPro:HSPRO1_N	InterPro:Hs1pro-1_C	PFAM:PF07014	PFAM:PF07231
PANTHER:PTHR34795	SUPFAM:SSF140959	EnsemblPlantsGene:TraesCS3B01G400800	EnsemblPlants:TraesCS3B01G400800.1	InterPro:Trp/Indoleamine_2_3_dOase-like	SEG:seg

Description

No Description!

Coordinates

chr3B:-:633375262..633376665

Molecular Weight (calculated)

51456.5 Da

IEP (calculated)

6.713

GRAVY (calculated)

-0.173

Length

467 amino acids

Sequence
(BLAST)

001: MATTKLSPLS PVRPDDRRRA PAASVVLKVQ DSTAAEAYEQ YLRLPELSRV WKTACCPGWP DEGLVKPALQ ALEITFRFVS VALSDPRGYA SRRELARRLE
101: SLTAREVEVV AALCEGDRGA PLAELSASEG VLPRERSASE VWQLPGSAAA VVCHASEASL LPRLAAWDKS ETLAAKIKYA IESQMQGCAF SLGLGEPNLA
201: GKPVLEYDRI VQPHELHALK PRVAPEPKTG YRNRENEALF TIHQILESWL CAASQLLTRL NSRIEAKDWE AAANDCWILE RIWKLLADIE DLHLLMDPDD
301: FLRLKSQLAI RSAPDGTDAS FCFRSRALLH AGNATRYIKK LVPWVIGVEV DPNGGPRVQE AAMRLYHGRR RGEGEDAGKI ELLQAFQAVE AAVRRFFFAY
401: RQVVAAVCGT AEASGNRALF APAEGTDPLS QMFLEPPYFP SLDAAKTFLA DYWVQHMAAA SVPSGRS

Best Arabidopsis Sequence Match ( AT3G55840.1 )
(BLAST)

001: MADLDLQRKM VSPKLHVTIP EPCKLSSVSS PISSSSSAAC SAYELYLRLP ELRNLWSSLY FPHWISEPVL KPALQALEIT FRLILTVASD TRPYINRREW
101: IRRLDSLTTS QIKIVAAICG DEDNYEENVS AAPVSNGWSS LSLLSEIATC RTSESVGQKI LSTIENEMRW CKYTLGLGEP NLAGKPYLQY DAVCLPEELH
201: SLKNNPYADH IENQENQMLY TSHQILESWI YVSVNLLYRI ESRIEEGKFE KASSDVYLLE RIWKLLSEIE DLHILMDPED FLKVKKQLQI KSTFPNDAFC
301: FRSKGLVEMA KMSKELRQKV PAVLEVEVDP TGGPRLQEAA MKLYSRKTEY EKIHLLQGMQ AVESAAKRFF FGYQKLVAAM IGNAEANANR TVANHESYDS
401: LTQVFMEPPY YPSLDAAKTF LGEFWSQL

Arabidopsis Description

HSPRO1Nematode resistance protein-like HSPRO1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY61]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.