Factsheet for Bra017040.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
vacuole 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, vacuole
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	vacuole
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra018586.1-P
Bra030752.1-P
Bra031654.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G40000.1	Bra018586.1-P	AT1G09020.1	17028154
AT2G40000.1	Bra030752.1-P	AT1G09020.1	17028154
AT2G40000.1	Bra031654.1-P	AT1G09020.1	17028154

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07047	Canola	cytosol	98.81	98.81
Bra000158.1-P	Field mustard	cytosol, nucleus, vacuole	81.24	80.66
AT2G40000.1	Thale cress	cytosol	80.76	78.16
Bra004994.1-P	Field mustard	cytosol	74.82	75.36
Bra007195.1-P	Field mustard	cytosol	68.17	67.53
KRG97765	Soybean	plastid	57.24	53.44
VIT_13s0067g00260.t01	Wine grape	cytosol, nucleus, plastid, vacuole	59.86	52.94
KRH31120	Soybean	nucleus	57.01	52.75
KRH73164	Soybean	cytosol	51.54	49.66
KRH14977	Soybean	plastid	53.44	48.28
GSMUA_Achr10P...	Banana	nucleus	49.88	47.84
GSMUA_Achr5P28920_001	Banana	cytosol	45.84	47.65
GSMUA_Achr11P...	Banana	plastid	50.12	44.61
HORVU3Hr1G111690.1	Barley	cytosol	13.3	41.48
KXG33721	Sorghum	plastid	45.13	40.51
TraesCS3D01G361800.1	Wheat	cytosol	44.89	40.47
HORVU3Hr1G084830.1	Barley	cytosol	44.66	40.26
Zm00001d042811_P001	Maize	cytosol	44.66	40.17
TraesCS3A01G368800.1	Wheat	cytosol	44.42	40.04
TraesCS3B01G400800.1	Wheat	cytosol, mitochondrion, plastid	43.94	39.61
Os01t0855600-01	Rice	plasma membrane	43.94	39.03
Zm00001d012321_P001	Maize	plastid	42.52	37.76

Protein Annotations

KEGG:00380+1.13.11.11	MapMan:35.1	EnsemblPlantsGene:Bra017040	EnsemblPlants:Bra017040.1	EnsemblPlants:Bra017040.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0006950	GO:GO:0006952	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0019441	GO:GO:0020037	GO:GO:0046872	InterPro:HSPRO1/HSPRO2	InterPro:HSPRO1_N
InterPro:Hs1pro-1_C	UniProt:M4DKK9	PFAM:PF07014	PFAM:PF07231	PANTHER:PTHR34795	SUPFAM:SSF140959
InterPro:Trp/Indoleamine_2_3_dOase-like	UniParc:UPI0002544D72	SEG:seg	:	:	:

Description

AT2G40000 (E=2e-191) HSPRO2, ATHSPRO2 | HSPRO2 (ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2)

Coordinates

chrA04:-:16986632..16987897

Molecular Weight (calculated)

48075.8 Da

IEP (calculated)

7.167

GRAVY (calculated)

-0.369

Length

421 amino acids

Sequence
(BLAST)

001: MVDTDWKSKM VSSESPKLSS KLHVTIPSPF KVVAVSSPIS CSAPAACSAY ELYLRLPELR SLWSSRDFPR WSNEPILKPS LQALEITFRL VLSVCSDARP
101: YINHREWNRR LDSLVTHQIQ LIASICEEDD QSAPVSDGRS SLSLLPQLAT WRKTESLGKK FLCTIDNEMR RCKYTLGLGE QNVSNKPNLR YDAVCKPNDL
201: YRLKDNPYAD HVDNDENQTL YVLHQILESW IHASLSLLNR IDENINEEKF GKASSDVYLL ERIWRLMTEI EDLHILMDPE DFLKLKKQLQ IKSTGKNDAF
301: CFRSRGLVEM TKMSKDLRQK IPKILEVEVD PTGGPRLQEA AMRMYARKKG ECDKIHLLQG MQAVEGAAKS FFFAYKQLVA VMMGSSQVES DSLSQIFMEP
401: TYYPSLDAAK TFLGEFWGNL G

Best Arabidopsis Sequence Match ( AT2G40000.1 )
(BLAST)

001: MVDMDWKRKM VSSDLPNSPK LSSKLHVTIP SPFKIVPVSS PISCSAPALC SAYELYLRLP ELRKLWSSRD FPQWTSEPIL KPALQALEIS FRLVFAVCSD
101: TRPYINHREW NRRLDSLITK QIQLVAAICE DEEEEGISAE APVGGGRSSL SLLPQLATWR RSEALGKKIL YTIDNEMSRC KYTLGLGEQN IAGKPNLRYD
201: AICRPNEIYS LKDNPYADHI DNHENQTLYI IHQILESWIY ASGNLLNRIV SSIEEEKFGK ASNDVYLLEK IWKILAEIED LHMLMDPEDF LKLKKQLQIK
301: STGKNDAFCF RSKGLVEMMK MSKDLRQKVP AVLAVEVDPT GGPRLQEAAM KLYARKTECD KIHLLQGMQA VEAAAKSFFF GYRQLVAAMM GSAEMNATAS
401: QESCDSLSQI FMEPTYFPSL DAAKTFLGEF WSHLG

Arabidopsis Description

HSPRO2Nematode resistance protein-like HSPRO2 [Source:UniProtKB/Swiss-Prot;Acc:O04203]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.