Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra007195.1-P | |
| Bra008651.1-P | |
| Bra018586.1-P | |
| Bra030752.1-P | |
| Bra031654.1-P |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27261 | Canola | cytosol | 97.88 | 97.88 |
| AT3G55840.1 | Thale cress | cytosol, plastid | 83.53 | 82.94 |
| Bra017040.1-P | Field mustard | cytosol | 67.53 | 68.17 |
| Bra004994.1-P | Field mustard | cytosol | 65.18 | 66.27 |
| Bra000158.1-P | Field mustard | cytosol, nucleus, vacuole | 65.88 | 66.04 |
| VIT_13s0067g00260.t01 | Wine grape | cytosol, nucleus, plastid, vacuole | 57.18 | 51.05 |
| KRH31120 | Soybean | nucleus | 53.65 | 50.11 |
| KRG97765 | Soybean | plastid | 52.94 | 49.89 |
| KRH73164 | Soybean | cytosol | 49.65 | 48.28 |
| KRH14977 | Soybean | plastid | 51.53 | 47.0 |
| GSMUA_Achr10P... | Banana | nucleus | 47.76 | 46.24 |
| GSMUA_Achr5P28920_001 | Banana | cytosol | 42.82 | 44.94 |
| HORVU3Hr1G111690.1 | Barley | cytosol | 14.12 | 44.44 |
| GSMUA_Achr11P... | Banana | plastid | 48.71 | 43.76 |
| KXG33721 | Sorghum | plastid | 47.29 | 42.86 |
| TraesCS3D01G361800.1 | Wheat | cytosol | 47.06 | 42.83 |
| HORVU3Hr1G084830.1 | Barley | cytosol | 46.59 | 42.4 |
| TraesCS3A01G368800.1 | Wheat | cytosol | 46.59 | 42.4 |
| Zm00001d042811_P001 | Maize | cytosol | 46.35 | 42.09 |
| TraesCS3B01G400800.1 | Wheat | cytosol, mitochondrion, plastid | 46.12 | 41.97 |
| Zm00001d012321_P001 | Maize | plastid | 45.88 | 41.14 |
| Os01t0855600-01 | Rice | plasma membrane | 45.65 | 40.93 |
Protein Annotations
| KEGG:00380+1.13.11.11 | MapMan:35.1 | EnsemblPlantsGene:Bra007195 | EnsemblPlants:Bra007195.1 | EnsemblPlants:Bra007195.1-P | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0006950 | GO:GO:0006952 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0019441 | GO:GO:0020037 | GO:GO:0046872 | InterPro:HSPRO1/HSPRO2 | InterPro:HSPRO1_N |
| InterPro:Hs1pro-1_C | UniProt:M4CSK3 | PFAM:PF07014 | PFAM:PF07231 | PANTHER:PTHR34795 | SUPFAM:SSF140959 |
| InterPro:Trp/Indoleamine_2_3_dOase-like | UniParc:UPI0002542AAB | SEG:seg | : | : | : |
Description
AT3G55840 (E=3e-198) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Hs1pro-1, C-terminal (InterPro:IPR009743), Hs1pro-1, N-terminal (InterPro:IPR009869); BEST Arabidopsis thaliana protein match is: HSPRO2 (ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2) (TAIR:AT2G40000.1); Has 43 Blast hits to 43 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Coordinates
chrA09:-:27885483..27886760
Molecular Weight (calculated)
48324.0 Da
IEP (calculated)
5.882
GRAVY (calculated)
-0.273
Length
425 amino acids
Sequence
(BLAST)
(BLAST)
001: MADLDMERKM VSPKKLHVTI PELFDISVSS PISSSSSAAA YELYLRLPEL RNIWSSLGFP QWVTEPVLKP ALQALEITFR LILTVASDTR PYINRQEWTR
101: RLDSLVTSQI KIVASLCEDD DECVPVSNGW SSMSLLSEIA TCRTTESIGQ KILCTVENEM RWCKYTLGLG EPNLAGKPYL QYDVVCRPEE LQSLKNNPYA
201: DHIGNQENQT LYTIHQILES WIHVSLNLLN RIESRIDEAK FEKASSDVYL LETIWNLLSE IKDLHILMDP EDFLKVKKQL KIKSTSQNDA FCFRSKGLVE
301: MAKMSRELRQ KVPAVLQVEV DPTGGPRLQE AAMKLYSSKT EYEKIHLLQG MQAVESASKR FFFGYQKLAA TMMGSAEANA NRTAASHHET CDSLTQVFME
401: PTYYPSLDAA KTFLGEFWSN LVSRH
101: RLDSLVTSQI KIVASLCEDD DECVPVSNGW SSMSLLSEIA TCRTTESIGQ KILCTVENEM RWCKYTLGLG EPNLAGKPYL QYDVVCRPEE LQSLKNNPYA
201: DHIGNQENQT LYTIHQILES WIHVSLNLLN RIESRIDEAK FEKASSDVYL LETIWNLLSE IKDLHILMDP EDFLKVKKQL KIKSTSQNDA FCFRSKGLVE
301: MAKMSRELRQ KVPAVLQVEV DPTGGPRLQE AAMKLYSSKT EYEKIHLLQG MQAVESASKR FFFGYQKLAA TMMGSAEANA NRTAASHHET CDSLTQVFME
401: PTYYPSLDAA KTFLGEFWSN LVSRH
001: MADLDLQRKM VSPKLHVTIP EPCKLSSVSS PISSSSSAAC SAYELYLRLP ELRNLWSSLY FPHWISEPVL KPALQALEIT FRLILTVASD TRPYINRREW
101: IRRLDSLTTS QIKIVAAICG DEDNYEENVS AAPVSNGWSS LSLLSEIATC RTSESVGQKI LSTIENEMRW CKYTLGLGEP NLAGKPYLQY DAVCLPEELH
201: SLKNNPYADH IENQENQMLY TSHQILESWI YVSVNLLYRI ESRIEEGKFE KASSDVYLLE RIWKLLSEIE DLHILMDPED FLKVKKQLQI KSTFPNDAFC
301: FRSKGLVEMA KMSKELRQKV PAVLEVEVDP TGGPRLQEAA MKLYSRKTEY EKIHLLQGMQ AVESAAKRFF FGYQKLVAAM IGNAEANANR TVANHESYDS
401: LTQVFMEPPY YPSLDAAKTF LGEFWSQL
101: IRRLDSLTTS QIKIVAAICG DEDNYEENVS AAPVSNGWSS LSLLSEIATC RTSESVGQKI LSTIENEMRW CKYTLGLGEP NLAGKPYLQY DAVCLPEELH
201: SLKNNPYADH IENQENQMLY TSHQILESWI YVSVNLLYRI ESRIEEGKFE KASSDVYLLE RIWKLLSEIE DLHILMDPED FLKVKKQLQI KSTFPNDAFC
301: FRSKGLVEMA KMSKELRQKV PAVLEVEVDP TGGPRLQEAA MKLYSRKTEY EKIHLLQGMQ AVESAAKRFF FGYQKLVAAM IGNAEANANR TVANHESYDS
401: LTQVFMEPPY YPSLDAAKTF LGEFWSQL
Arabidopsis Description
HSPRO1Nematode resistance protein-like HSPRO1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY61]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.