Factsheet for Zm00001d042811_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002027_P002
Zm00001d012321_P001
Zm00001d012817_P002
Zm00001d034896_P003
Zm00001d042811_P001
Zm00001d047883_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G40000.1	Zm00001d012817_P002	AT1G09020.1	17028154
AT2G40000.1	Zm00001d034896_P003	AT1G09020.1	17028154
AT3G55840.1	Zm00001d012817_P002	AT1G09020.1	17028154
AT3G55840.1	Zm00001d034896_P003	AT1G09020.1	17028154
AT3G55840.1	Zm00001d002027_P002	AT1G71230.1	21798944
AT3G55840.1	Zm00001d012321_P001	AT3G55840.1	21798944
AT3G55840.1	Zm00001d042811_P001	AT3G55840.1	21798944
AT3G55840.1	Zm00001d047883_P001	AT5G16080.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG33721	Sorghum	plastid	94.66	94.46
Zm00001d012321_P001	Maize	plastid	86.54	85.44
TraesCS3D01G361800.1	Wheat	cytosol	82.48	82.66
HORVU3Hr1G084830.1	Barley	cytosol	82.27	82.44
TraesCS3A01G368800.1	Wheat	cytosol	82.27	82.44
Os01t0855600-01	Rice	plasma membrane	82.69	81.65
TraesCS3B01G400800.1	Wheat	cytosol, mitochondrion, plastid	80.98	81.16
HORVU3Hr1G111690.1	Barley	cytosol	20.3	70.37
GSMUA_Achr5P28920_001	Banana	cytosol	51.92	60.0
GSMUA_Achr10P...	Banana	nucleus	53.42	56.95
GSMUA_Achr11P...	Banana	plastid	56.41	55.81
CDY20507	Canola	cytosol	22.22	52.79
VIT_13s0067g00260.t01	Wine grape	cytosol, nucleus, plastid, vacuole	52.56	51.68
CDX68585	Canola	cytosol	8.97	51.22
CDY04614	Canola	cytosol	8.97	51.22
CDX72167	Canola	cytosol	8.76	50.0
AT3G55840.1	Thale cress	cytosol, plastid	43.59	47.66
KRG97765	Soybean	plastid	45.51	47.23
Bra000158.1-P	Field mustard	cytosol, nucleus, vacuole	42.52	46.93
CDY27261	Canola	cytosol	42.52	46.82
CDX72197	Canola	cytosol	42.52	46.82
CDY60990	Canola	cytosol, nucleus, plastid, vacuole	42.09	46.57
CDX74813	Canola	cytosol	41.67	46.54
CDY24933	Canola	cytosol	41.88	46.45
CDY70017	Canola	cytosol	41.67	46.43
Bra004994.1-P	Field mustard	cytosol	41.45	46.41
Bra007195.1-P	Field mustard	cytosol	42.09	46.35
KRH31120	Soybean	nucleus	44.87	46.15
AT2G40000.1	Thale cress	cytosol	41.67	44.83
Bra017040.1-P	Field mustard	cytosol	40.17	44.66
CDY07047	Canola	cytosol	39.96	44.42
CDY61713	Canola	cytosol	39.53	43.84
KRH14977	Soybean	plastid	42.09	42.27
KRH73164	Soybean	cytosol	39.32	42.11

Protein Annotations

KEGG:00380+1.13.11.11	EntrezGene:100284742	MapMan:35.1	EMBL:BT062635	UniProt:C0P2W6	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0006950	GO:GO:0006952	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0019441	GO:GO:0020037	GO:GO:0046872	InterPro:HSPRO1/HSPRO2
InterPro:HSPRO1_N	InterPro:Hs1pro-1_C	ProteinID:ONM36347.1	PFAM:PF07014	PFAM:PF07231	PANTHER:PTHR34795
SUPFAM:SSF140959	InterPro:Trp/Indoleamine_2_3_dOase-like	UniParc:UPI0001948E6A	EnsemblPlantsGene:Zm00001d042811	EnsemblPlants:Zm00001d042811_P001	EnsemblPlants:Zm00001d042811_T001
SEG:seg	:	:	:	:	:

Description

Nematode resistance protein-like HSPRO2

Coordinates

chr3:+:180893820..180895226

Molecular Weight (calculated)

51443.6 Da

IEP (calculated)

5.157

GRAVY (calculated)

-0.108

Length

468 amino acids

Sequence
(BLAST)

001: MATPDLSPVS PVRRDDKQCA PSSSSCTILR VQDASAAEAY EQYLRLPELS SLWEAGCFPE WASEGLVKPA LQALEVTFRL ASLALSDPRG YASRRELARR
101: LESLAAREVG LVSALCEGDR SAPLAELGAS GGVLPRERSA SEVWQLPGSA AAVVCQVSEA SLLPRLAAWD KSETLAAKIM YAIESQMQGC AFTLGLGEPN
201: LAGKPVLEYD RVVRPHELHA LKPKPAPEPK SGYLNRENET LFTMYQILES WLRAASQLLA RLNERIEAKN WEAAAADCWI LERVWKLLAD VEDLHLLMDP
301: DDFLRLKGQL AVRAAPWSDA SFCFRSRALL HVANTTRDLK KRVPWVLGVE VDPNGGPRVQ EAAMMLYHSR RRGEGEEAGK VELLQAFQAV EVAVRGFFFA
401: YRQLVAAVMG TAEALGNRAL FVPAEGMDPL AQMFLEPPYY PSLDAAKTFL ADYWVQQMAG ASAPSIQS

Best Arabidopsis Sequence Match ( AT3G55840.1 )
(BLAST)

001: MADLDLQRKM VSPKLHVTIP EPCKLSSVSS PISSSSSAAC SAYELYLRLP ELRNLWSSLY FPHWISEPVL KPALQALEIT FRLILTVASD TRPYINRREW
101: IRRLDSLTTS QIKIVAAICG DEDNYEENVS AAPVSNGWSS LSLLSEIATC RTSESVGQKI LSTIENEMRW CKYTLGLGEP NLAGKPYLQY DAVCLPEELH
201: SLKNNPYADH IENQENQMLY TSHQILESWI YVSVNLLYRI ESRIEEGKFE KASSDVYLLE RIWKLLSEIE DLHILMDPED FLKVKKQLQI KSTFPNDAFC
301: FRSKGLVEMA KMSKELRQKV PAVLEVEVDP TGGPRLQEAA MKLYSRKTEY EKIHLLQGMQ AVESAAKRFF FGYQKLVAAM IGNAEANANR TVANHESYDS
401: LTQVFMEPPY YPSLDAAKTF LGEFWSQL

Arabidopsis Description

HSPRO1Nematode resistance protein-like HSPRO1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY61]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.