CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX93522
CDX95016
CDY06344
CDY22651
CDY31116
CDY32146

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G40000.1	CDX93522	AT1G09020.1	17028154
AT2G40000.1	CDX95016	AT1G09020.1	17028154
AT2G40000.1	CDY06344	AT1G09020.1	17028154
AT2G40000.1	CDY22651	AT1G09020.1	17028154
AT2G40000.1	CDY31116	AT1G09020.1	17028154
AT2G40000.1	CDY32146	AT1G09020.1	17028154

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68585	Canola	cytosol	39.09	93.9
CDY04614	Canola	cytosol	39.09	93.9
CDX72167	Canola	cytosol	38.07	91.46
HORVU3Hr1G111690.1	Barley	cytosol	31.98	46.67
CDY70017	Canola	cytosol	95.94	45.0
CDX74813	Canola	cytosol	93.91	44.15
CDY60990	Canola	cytosol, nucleus, plastid, vacuole	79.19	36.88
CDY24933	Canola	cytosol	78.68	36.73
AT2G40000.1	Thale cress	cytosol	76.65	34.71
CDY07047	Canola	cytosol	72.59	33.97
CDY61713	Canola	cytosol	72.08	33.65
CDY27261	Canola	cytosol	70.05	32.47
CDX72197	Canola	cytosol	69.54	32.24
KRG97765	Soybean	plastid	59.9	26.16
KRH31120	Soybean	nucleus	59.9	25.93
VIT_13s0067g00260.t01	Wine grape	cytosol, nucleus, plastid, vacuole	61.93	25.63
KRH73164	Soybean	cytosol	53.3	24.03
GSMUA_Achr11P...	Banana	plastid	56.85	23.68
GSMUA_Achr10P...	Banana	nucleus	51.78	23.23
Os01t0855600-01	Rice	plasma membrane	55.84	23.21
TraesCS3B01G400800.1	Wheat	cytosol, mitochondrion, plastid	54.82	23.13
HORVU3Hr1G084830.1	Barley	cytosol	54.31	22.91
TraesCS3A01G368800.1	Wheat	cytosol	54.31	22.91
TraesCS3D01G361800.1	Wheat	cytosol	54.31	22.91
KRH14977	Soybean	plastid	53.81	22.75
KXG33721	Sorghum	plastid	53.3	22.39
Zm00001d042811_P001	Maize	cytosol	52.79	22.22
GSMUA_Achr5P28920_001	Banana	cytosol	45.18	21.98
Zm00001d012321_P001	Maize	plastid	51.27	21.31

Protein Annotations

EnsemblPlants:CDY20507	EnsemblPlantsGene:GSBRNA2T00012615001	GO:GO:0003674	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0019441	GO:GO:0020037	GO:GO:0046872	InterPro:HSPRO1/HSPRO2
InterPro:Hs1pro-1_C	InterPro:Trp/Indoleamine_2_3_dOase-like	KEGG:00380+1.13.11.11	PANTHER:PTHR34795	PFAM:PF07014	ProteinID:CDY20507
ProteinID:CDY20507.1	SUPFAM:SSF140959	UniParc:UPI0004EED70D	UniProt:A0A078G6D2	MapMan:35.1	:

Description

BnaC04g05370DBnaC04g05370D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G6D2]

Coordinates

chrLK032108:-:609277..609870

Molecular Weight (calculated)

22464.3 Da

IEP (calculated)

7.046

GRAVY (calculated)

-0.165

Length

197 amino acids

Sequence
(BLAST)

001: MESWVHVSLN LLRRINTRVD EGRFGEASGD VYLVESIWKL LTDVEDLHLL MDPEDFLKLK KQLHIKTAGK NDAFCFRSRG LVEVMKMSKG LREKVPFVLG
101: VEVDPTGGPR LQEVAMRLYA RKREECDKIH LLQGMQGVEA AAKRFFFAYK QVVAAVMGSA EMNTECDSVR QIFMEPTYFP SLDAAKTFLG EFWSHVG

Best Arabidopsis Sequence Match ( AT2G40000.1 )
(BLAST)

001: MVDMDWKRKM VSSDLPNSPK LSSKLHVTIP SPFKIVPVSS PISCSAPALC SAYELYLRLP ELRKLWSSRD FPQWTSEPIL KPALQALEIS FRLVFAVCSD
101: TRPYINHREW NRRLDSLITK QIQLVAAICE DEEEEGISAE APVGGGRSSL SLLPQLATWR RSEALGKKIL YTIDNEMSRC KYTLGLGEQN IAGKPNLRYD
201: AICRPNEIYS LKDNPYADHI DNHENQTLYI IHQILESWIY ASGNLLNRIV SSIEEEKFGK ASNDVYLLEK IWKILAEIED LHMLMDPEDF LKLKKQLQIK
301: STGKNDAFCF RSKGLVEMMK MSKDLRQKVP AVLAVEVDPT GGPRLQEAAM KLYARKTECD KIHLLQGMQA VEAAAKSFFF GYRQLVAAMM GSAEMNATAS
401: QESCDSLSQI FMEPTYFPSL DAAKTFLGEF WSHLG

Arabidopsis Description

HSPRO2Nematode resistance protein-like HSPRO2 [Source:UniProtKB/Swiss-Prot;Acc:O04203]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.