CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX93522
CDX95016
CDY06344
CDY22651
CDY31116
CDY32146

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G40000.1	CDX93522	AT1G09020.1	17028154
AT2G40000.1	CDX95016	AT1G09020.1	17028154
AT2G40000.1	CDY06344	AT1G09020.1	17028154
AT2G40000.1	CDY22651	AT1G09020.1	17028154
AT2G40000.1	CDY31116	AT1G09020.1	17028154
AT2G40000.1	CDY32146	AT1G09020.1	17028154

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68585	Canola	cytosol	97.56	97.56
CDY04614	Canola	cytosol	97.56	97.56
CDY20507	Canola	cytosol	91.46	38.07
HORVU3Hr1G111690.1	Barley	cytosol	35.37	21.48
CDY70017	Canola	cytosol	92.68	18.1
CDX74813	Canola	cytosol	91.46	17.9
CDY60990	Canola	cytosol, nucleus, plastid, vacuole	78.05	15.13
CDY24933	Canola	cytosol	76.83	14.93
AT2G40000.1	Thale cress	cytosol	75.61	14.25
CDY61713	Canola	cytosol	69.51	13.51
CDY07047	Canola	cytosol	68.29	13.3
CDX72197	Canola	cytosol	64.63	12.47
CDY27261	Canola	cytosol	64.63	12.47
KRG97765	Soybean	plastid	59.76	10.86
GSMUA_Achr11P...	Banana	plastid	62.2	10.78
KRH31120	Soybean	nucleus	58.54	10.55
VIT_13s0067g00260.t01	Wine grape	cytosol, nucleus, plastid, vacuole	60.98	10.5
GSMUA_Achr10P...	Banana	nucleus	54.88	10.25
HORVU3Hr1G084830.1	Barley	cytosol	54.88	9.64
TraesCS3A01G368800.1	Wheat	cytosol	54.88	9.64
TraesCS3B01G400800.1	Wheat	cytosol, mitochondrion, plastid	54.88	9.64
Os01t0855600-01	Rice	plasma membrane	54.88	9.49
TraesCS3D01G361800.1	Wheat	cytosol	53.66	9.42
KRH73164	Soybean	cytosol	50.0	9.38
KRH14977	Soybean	plastid	51.22	9.01
Zm00001d042811_P001	Maize	cytosol	50.0	8.76
KXG33721	Sorghum	plastid	50.0	8.74
Zm00001d012321_P001	Maize	plastid	48.78	8.44
GSMUA_Achr5P28920_001	Banana	cytosol	32.93	6.67

Protein Annotations

EnsemblPlants:CDX72167	EnsemblPlantsGene:GSBRNA2T00155992001	InterPro:HSPRO1/HSPRO2	InterPro:Hs1pro-1_C	PANTHER:PTHR34795	PFAM:PF07014
ProteinID:CDX72167	ProteinID:CDX72167.1	UniParc:UPI0004EB8DA5	MapMan:35.1	:	:

Description

BnaC08g27070D

Coordinates

chrLK031795:-:2786551..2786799

Molecular Weight (calculated)

9296.2 Da

IEP (calculated)

5.667

GRAVY (calculated)

-0.138

Length

82 amino acids

Sequence
(BLAST)

1: MRLYTRKGEE CDKIHLLQGM QGVEAVAKRF FFAYKQVVAA VMGSAETNTE CDSVRQIFME PAYLPSLDAD KTFLGEFWSH VG

Best Arabidopsis Sequence Match ( AT2G40000.1 )
(BLAST)

001: MVDMDWKRKM VSSDLPNSPK LSSKLHVTIP SPFKIVPVSS PISCSAPALC SAYELYLRLP ELRKLWSSRD FPQWTSEPIL KPALQALEIS FRLVFAVCSD
101: TRPYINHREW NRRLDSLITK QIQLVAAICE DEEEEGISAE APVGGGRSSL SLLPQLATWR RSEALGKKIL YTIDNEMSRC KYTLGLGEQN IAGKPNLRYD
201: AICRPNEIYS LKDNPYADHI DNHENQTLYI IHQILESWIY ASGNLLNRIV SSIEEEKFGK ASNDVYLLEK IWKILAEIED LHMLMDPEDF LKLKKQLQIK
301: STGKNDAFCF RSKGLVEMMK MSKDLRQKVP AVLAVEVDPT GGPRLQEAAM KLYARKTECD KIHLLQGMQA VEAAAKSFFF GYRQLVAAMM GSAEMNATAS
401: QESCDSLSQI FMEPTYFPSL DAAKTFLGEF WSHLG

Arabidopsis Description

HSPRO2Nematode resistance protein-like HSPRO2 [Source:UniProtKB/Swiss-Prot;Acc:O04203]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.