CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
vacuole 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, vacuole
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	vacuole
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX93522
CDX95016
CDY06344
CDY22651
CDY31116
CDY32146

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G40000.1	CDX93522	AT1G09020.1	17028154
AT2G40000.1	CDX95016	AT1G09020.1	17028154
AT2G40000.1	CDY06344	AT1G09020.1	17028154
AT2G40000.1	CDY22651	AT1G09020.1	17028154
AT2G40000.1	CDY31116	AT1G09020.1	17028154
AT2G40000.1	CDY32146	AT1G09020.1	17028154

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60990	Canola	cytosol, nucleus, plastid, vacuole	95.5	95.27
CDY07047	Canola	cytosol	80.09	80.28
AT2G40000.1	Thale cress	cytosol	82.23	79.77
CDY61713	Canola	cytosol	79.62	79.62
CDX68585	Canola	cytosol	15.4	79.27
CDY04614	Canola	cytosol	15.4	79.27
CDY20507	Canola	cytosol	36.73	78.68
CDY70017	Canola	cytosol	78.2	78.57
CDX74813	Canola	cytosol	77.25	77.8
CDX72167	Canola	cytosol	14.93	76.83
CDY27261	Canola	cytosol	68.01	67.53
CDX72197	Canola	cytosol	67.77	67.29
VIT_13s0067g00260.t01	Wine grape	cytosol, nucleus, plastid, vacuole	61.61	54.62
KRG97765	Soybean	plastid	57.82	54.1
KRH31120	Soybean	nucleus	58.06	53.85
GSMUA_Achr10P...	Banana	nucleus	52.37	50.34
KRH73164	Soybean	cytosol	51.42	49.66
GSMUA_Achr5P28920_001	Banana	cytosol	46.68	48.64
KRH14977	Soybean	plastid	52.84	47.85
GSMUA_Achr11P...	Banana	plastid	52.84	47.15
HORVU3Hr1G111690.1	Barley	cytosol	14.93	46.67
HORVU3Hr1G084830.1	Barley	cytosol	48.34	43.68
TraesCS3D01G361800.1	Wheat	cytosol	48.34	43.68
TraesCS3A01G368800.1	Wheat	cytosol	48.1	43.47
TraesCS3B01G400800.1	Wheat	cytosol, mitochondrion, plastid	47.63	43.04
Os01t0855600-01	Rice	plasma membrane	48.34	43.04
KXG33721	Sorghum	plastid	47.16	42.43
Zm00001d042811_P001	Maize	cytosol	46.45	41.88
Zm00001d012321_P001	Maize	plastid	45.02	40.08

Protein Annotations

KEGG:00380+1.13.11.11	MapMan:35.1	GO:A0A078GJZ8	UniProt:A0A078GJZ8	EnsemblPlants:CDY24933	ProteinID:CDY24933
ProteinID:CDY24933.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0006950	GO:GO:0006952	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019441	GO:GO:0020037	GO:GO:0046872
EnsemblPlantsGene:GSBRNA2T00028728001	InterPro:HSPRO1/HSPRO2	InterPro:HSPRO1_N	InterPro:Hs1pro-1_C	PFAM:PF07014	PFAM:PF07231
PANTHER:PTHR34795	SUPFAM:SSF140959	InterPro:Trp/Indoleamine_2_3_dOase-like	UniParc:UPI0004EC229D	SEG:seg	:

Description

BnaC03g22390DBnaC03g22390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GJZ8]

Coordinates

chrLK032166:+:318314..319700

Molecular Weight (calculated)

48110.9 Da

IEP (calculated)

6.781

GRAVY (calculated)

-0.354

Length

422 amino acids

Sequence
(BLAST)

001: MVDMDWKRKM VSSELSSKLH VTIPSPFKVP VSSPISCSAP AACSAYELYL RLPELKKLWS SREFPQWNDE PILKPALQAL EITFRLILSV CSDTRPYTNH
101: REWNRRLDSL VTNQIQLIAT ICEEDEEGDR SAPLGDKRSS LSLLPHLATW RKSEALGRKI LCTIDNEMRR CKYTLGLGEQ NIAGKPNLRY DAVCKPNEVY
201: SLKDNPYADH IENEENQTLY VLHQILESWI HASGNLLRRI NTRISEGRFG DAASDVYLVE RIWKLMAEIE DLHVLMDPED FLKLKKQLQI KSNGQNDAFC
301: FRSRGLVEMM KMTKDLREKV PAVLGVEVDP TGGPRLQDAV MRLYATKGDC DKIHLLQGMQ AVEAAAKRFF FAYKQLVAVV MGSAETSQES RDSLSQIYME
401: PTYFPSLDAA KTFLGEFWSH LG

Best Arabidopsis Sequence Match ( AT2G40000.1 )
(BLAST)

001: MVDMDWKRKM VSSDLPNSPK LSSKLHVTIP SPFKIVPVSS PISCSAPALC SAYELYLRLP ELRKLWSSRD FPQWTSEPIL KPALQALEIS FRLVFAVCSD
101: TRPYINHREW NRRLDSLITK QIQLVAAICE DEEEEGISAE APVGGGRSSL SLLPQLATWR RSEALGKKIL YTIDNEMSRC KYTLGLGEQN IAGKPNLRYD
201: AICRPNEIYS LKDNPYADHI DNHENQTLYI IHQILESWIY ASGNLLNRIV SSIEEEKFGK ASNDVYLLEK IWKILAEIED LHMLMDPEDF LKLKKQLQIK
301: STGKNDAFCF RSKGLVEMMK MSKDLRQKVP AVLAVEVDPT GGPRLQEAAM KLYARKTECD KIHLLQGMQA VEAAAKSFFF GYRQLVAAMM GSAEMNATAS
401: QESCDSLSQI FMEPTYFPSL DAAKTFLGEF WSHLG

Arabidopsis Description

HSPRO2Nematode resistance protein-like HSPRO2 [Source:UniProtKB/Swiss-Prot;Acc:O04203]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.