Factsheet for GSMUA_Achr10P00680_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr5P28920_001
GSMUA_Achr6P16980_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G40000.1	GSMUA_AchrUn_...	AT1G09020.1	17028154
AT2G40000.1	GSMUA_AchrUn_...	AT1G09020.1	17028154
AT3G55840.1	GSMUA_AchrUn_...	AT1G09020.1	17028154
AT3G55840.1	GSMUA_AchrUn_...	AT1G09020.1	17028154
AT3G55840.1	GSMUA_Achr10P...	AT1G71230.1	21798944
AT3G55840.1	GSMUA_Achr10P...	AT3G55840.1	21798944
AT3G55840.1	GSMUA_Achr11P...	AT3G55840.1	21798944
AT3G55840.1	GSMUA_Achr5P28920_001	AT3G55840.1	21798944
AT3G55840.1	GSMUA_Achr10P...	AT5G16080.1	21798944
AT3G55840.1	GSMUA_Achr6P16980_001	AT5G16080.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P28920_001	Banana	cytosol	68.34	74.07
GSMUA_Achr11P...	Banana	plastid	75.4	69.98
CDX68585	Canola	cytosol	10.71	57.32
CDY04614	Canola	cytosol	10.71	57.32
CDX72167	Canola	cytosol	10.25	54.88
Os01t0855600-01	Rice	plasma membrane	59.23	54.85
TraesCS3A01G368800.1	Wheat	cytosol	58.31	54.82
KXG33721	Sorghum	plastid	58.54	54.8
HORVU3Hr1G084830.1	Barley	cytosol	58.09	54.6
TraesCS3D01G361800.1	Wheat	cytosol	58.09	54.6
Zm00001d012321_P001	Maize	plastid	57.86	53.59
Zm00001d042811_P001	Maize	cytosol	56.95	53.42
TraesCS3B01G400800.1	Wheat	cytosol, mitochondrion, plastid	56.49	53.1
HORVU3Hr1G111690.1	Barley	cytosol	16.17	52.59
CDY24933	Canola	cytosol	50.34	52.37
CDY20507	Canola	cytosol	23.23	51.78
Bra000158.1-P	Field mustard	cytosol, nucleus, vacuole	49.2	50.94
CDY60990	Canola	cytosol, nucleus, plastid, vacuole	48.52	50.35
CDY61713	Canola	cytosol	48.06	50.0
KRG97765	Soybean	plastid	51.25	49.89
Bra017040.1-P	Field mustard	cytosol	47.84	49.88
VIT_13s0067g00260.t01	Wine grape	cytosol, nucleus, plastid, vacuole	53.76	49.58
CDY07047	Canola	cytosol	47.38	49.41
KRH31120	Soybean	nucleus	50.57	48.79
AT3G55840.1	Thale cress	cytosol, plastid	47.38	48.6
AT2G40000.1	Thale cress	cytosol	48.06	48.51
CDY27261	Canola	cytosol	46.92	48.47
CDY70017	Canola	cytosol	46.01	48.1
Bra004994.1-P	Field mustard	cytosol	45.56	47.85
CDX72197	Canola	cytosol	46.24	47.76
Bra007195.1-P	Field mustard	cytosol	46.24	47.76
CDX74813	Canola	cytosol	45.33	47.49
KRH73164	Soybean	cytosol	42.6	42.79
KRH14977	Soybean	plastid	44.19	41.63

Protein Annotations

KEGG:00380+1.13.11.11	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0006950	GO:GO:0006952
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019441	GO:GO:0020037
GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr10G00680_001	EnsemblPlants:GSMUA_Achr10P00680_001	EnsemblPlants:GSMUA_Achr10T00680_001	InterPro:HSPRO1/HSPRO2	InterPro:HSPRO1_N
InterPro:Hs1pro-1_C	UniProt:M0RE95	PFAM:PF07014	PFAM:PF07231	PANTHER:PTHR34795	SUPFAM:SSF140959
InterPro:Trp/Indoleamine_2_3_dOase-like	UniParc:UPI000294B191	SEG:seg	:	:	:

Description

hs1, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G00680_001]

Coordinates

chr10:-:1232732..1234329

Molecular Weight (calculated)

48801.0 Da

IEP (calculated)

6.606

GRAVY (calculated)

-0.262

Length

439 amino acids

Sequence
(BLAST)

001: MAASEISSRS SPASDSKSHP ATIPAPPLIN DASATAAYEH YLRLPELAKL WSSENFSQWS NESVIKPSLQ ALEITFRFIS LVLSDSRPYA NHREWKRRLQ
101: SLAAHQVELI ATLCEEDGGG APTAGTTSVV SRTSEASLLP RLATWEKSAD VASVILFQIE SQMQRCPFTL GLGEPNLAGK PTLEYDLVVR PLALHALKRS
201: PGGSNEPRNH EDQALCTIHQ ILESWLFAAR LLLARIERRI QGKEWAQAAS DCWLLERVWK LLSEADDLHM LIDPDDFLQL KSKLVITTDS EAYCFRSAAL
301: VQVTSSCKDL KQRVPSILGV EADPNGGPRV QDAAMRLFHG RQRGDGDNPG KIDLLQALQA VEVALRRFFF AYRQLVAAVM GSLEASGNRA VYVPWESLDP
401: ASQLFLEPPY FPSLDAAKTF LGDFWQQQQK PKRLNNRTN

Best Arabidopsis Sequence Match ( AT2G40000.1 )
(BLAST)

001: MVDMDWKRKM VSSDLPNSPK LSSKLHVTIP SPFKIVPVSS PISCSAPALC SAYELYLRLP ELRKLWSSRD FPQWTSEPIL KPALQALEIS FRLVFAVCSD
101: TRPYINHREW NRRLDSLITK QIQLVAAICE DEEEEGISAE APVGGGRSSL SLLPQLATWR RSEALGKKIL YTIDNEMSRC KYTLGLGEQN IAGKPNLRYD
201: AICRPNEIYS LKDNPYADHI DNHENQTLYI IHQILESWIY ASGNLLNRIV SSIEEEKFGK ASNDVYLLEK IWKILAEIED LHMLMDPEDF LKLKKQLQIK
301: STGKNDAFCF RSKGLVEMMK MSKDLRQKVP AVLAVEVDPT GGPRLQEAAM KLYARKTECD KIHLLQGMQA VEAAAKSFFF GYRQLVAAMM GSAEMNATAS
401: QESCDSLSQI FMEPTYFPSL DAAKTFLGEF WSHLG

Arabidopsis Description

HSPRO2Nematode resistance protein-like HSPRO2 [Source:UniProtKB/Swiss-Prot;Acc:O04203]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.