Factsheet for GSMUA_Achr6P16980_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr3P25070_001
GSMUA_Achr7P14150_001
GSMUA_Achr8P05370_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G16080.1	GSMUA_Achr8P05370_001	AT4G00980.1	21798944
AT5G16080.1	GSMUA_Achr10P...	AT4G01090.1	21798944
AT5G16080.1	GSMUA_Achr10P...	AT4G01090.1	21798944
AT5G16080.1	GSMUA_Achr10P...	AT4G01090.1	21798944
AT5G16080.1	GSMUA_Achr3P25070_001	AT4G01090.1	21798944
AT5G16080.1	GSMUA_Achr7P14150_001	AT4G01090.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	83.11	83.39
HORVU4Hr1G062060.1	Barley	mitochondrion	68.92	57.95
TraesCS4D01G219100.1	Wheat	mitochondrion	69.26	57.1
TraesCS4A01G085300.1	Wheat	mitochondrion	68.58	56.39
TraesCS4B01G218900.1	Wheat	mitochondrion	67.91	56.15
EER95156	Sorghum	mitochondrion	69.26	55.11
Zm00001d047883_P001	Maize	mitochondrion	67.57	54.05
Os03t0258200-01	Rice	mitochondrion	65.54	52.86
VIT_14s0006g03180.t01	Wine grape	cytosol	59.46	51.46
KRH01780	Soybean	cytosol	56.76	49.41
VIT_01s0011g03270.t01	Wine grape	cytosol	58.11	48.59
KRG90787	Soybean	cytosol, mitochondrion	57.43	48.3
CDY70129	Canola	cytosol	54.05	48.05
Bra008651.1-P	Field mustard	cytosol	52.7	46.99
CDX69476	Canola	cytosol	52.7	46.99
KRH46912	Soybean	cytosol	56.42	46.13
PGSC0003DMT400033010	Potato	cytosol	50.68	45.32
KRH35975	Soybean	cytosol	48.31	45.25
Solyc05g009610.1.1	Tomato	cytosol	52.7	45.22
PGSC0003DMT400033749	Potato	cytosol	52.7	45.09
AT5G16080.1	Thale cress	cytosol	52.03	44.77
Solyc02g085800.1.1	Tomato	cytosol	51.69	44.61
Bra004026.1-P	Field mustard	cytosol	45.95	41.46
Bra027693.1-P	Field mustard	cytosol	45.95	40.36
Bra038363.1-P	Field mustard	cytosol	45.95	40.36
Bra004326.1-P	Field mustard	cytosol	44.26	39.22
Bra004327.1-P	Field mustard	cytosol	44.26	39.22
AT1G68620.1	Thale cress	cytosol	44.26	38.99
GSMUA_Achr4P04980_001	Banana	cytosol	34.12	31.27
GSMUA_Achr6P32510_001	Banana	cytosol	30.41	31.14
GSMUA_Achr7P16460_001	Banana	cytosol	33.78	30.86
GSMUA_Achr2P01900_001	Banana	cytosol	31.76	30.23
GSMUA_Achr8P05900_001	Banana	cytosol	27.36	29.67
GSMUA_Achr11P...	Banana	cytosol	28.72	27.78
GSMUA_Achr3P24930_001	Banana	cytosol	27.03	26.14
GSMUA_Achr8P05910_001	Banana	cytosol	26.69	25.9
GSMUA_Achr6P16090_001	Banana	cytosol	26.69	25.73
GSMUA_Achr10P...	Banana	cytosol	26.69	25.48
GSMUA_Achr9P08260_001	Banana	plastid	19.26	25.22
GSMUA_Achr5P27430_001	Banana	cytosol	25.34	24.35
GSMUA_Achr2P05600_001	Banana	plastid	23.99	22.61
GSMUA_Achr5P27450_001	Banana	mitochondrion	25.68	22.49
GSMUA_Achr9P08270_001	Banana	cytosol, plastid	23.65	21.34
GSMUA_Achr6P29040_001	Banana	plastid	21.28	20.52
GSMUA_Achr6P29020_001	Banana	mitochondrion	22.97	20.0

Protein Annotations

EnsemblPlants:GSMUA_Achr6P16980_001	EnsemblPlants:GSMUA_Achr6T16980_001	EnsemblPlantsGene:GSMUA_Achr6G16980_001	Gene3D:3.40.50.1820	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:AB_hydrolase	InterPro:AB_hydrolase_3	InterPro:IPR029058
PANTHER:PTHR23024	PANTHER:PTHR23024:SF93	PFAM:PF07859	SUPFAM:SSF53474	UniParc:UPI000296866F	UniProt:M0T7P6
MapMan:35.1	:	:	:	:	:

Description

Putative Gibberellin receptor GID1 [Source:GMGC_GENE;Acc:GSMUA_Achr6G16980_001]

Coordinates

chr6:-:11446647..11447699

Molecular Weight (calculated)

32926.5 Da

IEP (calculated)

8.275

GRAVY (calculated)

-0.194

Length

296 amino acids

Sequence
(BLAST)

001: MRRRKMGALP QLSESRSSFQ PSKDHGPVIE EIQGLIKVCK DGHVERLPAV VDVPCTWAPE PDLPLLVYFH GGGFCVGSAA WRCYHEFLAR VASQAPCVVL
101: SVNYRLAPEH RLPVAYEDGL AAVRWVRQQM SHRAADEPGW WLAHCDFARV FLGGDSAGAA IAYNPFFGGV ARTSSEKNLV QSSRSALSLT TSDCYWRLAL
201: PPGADRDHPW CNPLAKGSPK LEDLRLPPAL VCISELDILR DRNMEFCKAM RSAGKSVEQA TYAGVGHAFQ VLHNYHMSHA RTTEMLTHIR AFIYSR

Best Arabidopsis Sequence Match ( AT5G16080.1 )
(BLAST)

001: MATISFSHNH QSSDNRRGGS HHHRHGPVVE EIEGLIKVFN DGCVERPPIV PIVSPTIHPS SKATAFDIKL SNDTWTRVYI PDAAAASPSV TLPLLVYFHG
101: GGFCVGSAAW SCYHDFLTSL AVKARCVIVS VNYRLAPEHR LPAAYDDGVN VVSWLVKQQI STGGGYPSWL SKCNLSNVFL AGDSAGANIA YQVAVRIMAS
201: GKYANTLHLK GIILIHPFFG GESRTSSEKQ QHHTKSSALT LSASDAYWRL ALPRGASRDH PWCNPLMSSA GAKLPTTMVF MAEFDILKER NLEMCKVMRS
301: HGKRVEGIVH GGVGHAFHIL DNSSVSRDRI HDMMCRLHNF IHPS

Arabidopsis Description

CXE17Probable carboxylesterase 17 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFR7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.