Factsheet for GSMUA_Achr2P05600_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P08260_001	Banana	plastid	48.41	67.26
GSMUA_Achr6P29040_001	Banana	plastid	65.61	67.1
GSMUA_Achr9P08270_001	Banana	cytosol, plastid	70.06	67.07
GSMUA_Achr6P29020_001	Banana	mitochondrion	66.56	61.47
KRH38783	Soybean	plastid	54.46	50.74
VIT_07s0130g00340.t01	Wine grape	plastid	53.82	50.45
VIT_07s0130g00320.t01	Wine grape	plastid	53.82	50.45
KRH09280	Soybean	plastid	53.82	50.0
KRH09281	Soybean	plastid	53.5	49.7
CDX88032	Canola	cytosol	52.23	48.96
CDX80370	Canola	cytosol	51.91	48.66
Bra009691.1-P	Field mustard	cytosol	51.59	48.36
Solyc10g054780.1.1	Tomato	nucleus	52.87	47.98
AT5G23530.1	Thale cress	cytosol	50.0	46.87
Bra026494.1-P	Field mustard	cytosol	50.0	46.87
CDY16855	Canola	cytosol	50.0	46.87
GSMUA_Achr11P...	Banana	cytosol	45.54	46.73
KRH09282	Soybean	extracellular	49.04	46.53
CDX87169	Canola	cytosol	49.04	45.97
KRH38784	Soybean	plastid	49.68	43.21
GSMUA_Achr3P24930_001	Banana	cytosol	32.48	33.33
GSMUA_Achr8P05910_001	Banana	cytosol	32.17	33.11
GSMUA_Achr5P27430_001	Banana	cytosol	31.85	32.47
GSMUA_Achr6P16090_001	Banana	cytosol	31.53	32.25
GSMUA_Achr10P...	Banana	cytosol	31.53	31.94
GSMUA_Achr5P27450_001	Banana	mitochondrion	32.17	29.88
GSMUA_Achr7P16460_001	Banana	cytosol	29.3	28.4
GSMUA_Achr4P04980_001	Banana	cytosol	28.66	27.86
GSMUA_Achr6P32510_001	Banana	cytosol	25.16	27.34
GSMUA_Achr10P...	Banana	cytosol	22.61	24.07
GSMUA_Achr6P16980_001	Banana	mitochondrion	22.61	23.99
GSMUA_Achr2P01900_001	Banana	cytosol	22.61	22.83
GSMUA_Achr8P05900_001	Banana	cytosol	19.43	22.34

Protein Annotations

EnsemblPlants:GSMUA_Achr2P05600_001	EnsemblPlants:GSMUA_Achr2T05600_001	EnsemblPlantsGene:GSMUA_Achr2G05600_001	Gene3D:3.40.50.1820	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:AB_hydrolase	InterPro:AB_hydrolase_3	InterPro:IPR029058
PANTHER:PTHR23024	PANTHER:PTHR23024:SF243	PFAM:PF07859	SEG:seg	SUPFAM:SSF53474	UniParc:UPI0002958237
UniProt:M0S5F1	MapMan:35.1	:	:	:	:

Description

Putative Probable gibberellin receptor GID1L3 [Source:GMGC_GENE;Acc:GSMUA_Achr2G05600_001]

Coordinates

chr2:-:10682107..10683120

Molecular Weight (calculated)

34409.8 Da

IEP (calculated)

7.668

GRAVY (calculated)

-0.138

Length

314 amino acids

Sequence
(BLAST)

001: MTQAPRPPLP WTTRISVAVA SAVTDAARRS NGTVNRRLLS LLDARSRASA KPYRGVRSAD VVVDPVHHIW FRLFAPSDSA AAAGEPFPVI VFFHGGGFAF
101: LSPASRAYDA VCRRICHEDG TDVLRFLDHG GLASADPAAA DLSCCFLAGD SAGANIAHHV ARRWAAGAGW ERVRLAGMVL IQPFFGGEER TEAELRLTRV
201: PLLSVERTDW MWRAFLPEGA DRDHEASNVF GTRAAAGELE ASLPEAMVVV GGFDPLQDWQ RRYYEGLRSR GKAARLVEYP DAIHAFYAFP ELKEASALME
301: EIKRFVDAHR SPAK

Best Arabidopsis Sequence Match ( AT5G23530.1 )
(BLAST)

001: MATDSQPNQK LTLPLKTRIA LTVISTMTDN AQRPDGTINR RFLRLFDFRA PPNPKPVNIV STSDFVVDQS RDLWFRLYTP HVSGDKIPVV VFFHGGGFAF
101: LSPNAYPYDN VCRRFARKLP AYVISVNYRL APEHRYPAQY DDGFDALKYI EENHGSILPA NADLSRCFFA GDSAGGNIAH NVAIRICREP RSSFTAVKLI
201: GLISIQPFFG GEERTEAEKQ LVGAPLVSPD RTDWCWKAMG LNRDHEAVNV GGPNAVDISG LDYPETMVVV AGFDPLKDWQ RSYYEWLKLC GKKATLIEYP
301: NMFHAFYIFP ELPEAGQLIM RIKDFVDERV ASLSA

Arabidopsis Description

CXE18Probable carboxylesterase 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9LT10]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.