Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
GSMUA_Achr5P27450_001 | Banana | mitochondrion | 99.35 | 90.53 |
GSMUA_Achr3P24930_001 | Banana | cytosol | 87.01 | 87.58 |
GSMUA_Achr8P05910_001 | Banana | cytosol | 83.77 | 84.59 |
GSMUA_Achr6P16090_001 | Banana | cytosol | 83.12 | 83.39 |
GSMUA_Achr10P... | Banana | cytosol | 83.77 | 83.23 |
AT5G27320.1 | Thale cress | cytosol | 70.78 | 63.37 |
Solyc06g008870.2.1 | Tomato | cytosol | 69.48 | 62.03 |
KRH33997 | Soybean | cytosol | 69.16 | 61.92 |
VIT_07s0104g00930.t01 | Wine grape | cytosol | 69.16 | 61.92 |
CDX80665 | Canola | cytosol | 69.16 | 61.92 |
PGSC0003DMT400056562 | Potato | cytosol | 69.16 | 61.74 |
Bra009970.1-P | Field mustard | cytosol | 68.83 | 61.45 |
KRG92803 | Soybean | cytosol | 68.51 | 61.34 |
CDY16687 | Canola | cytosol | 68.51 | 61.16 |
KRH71503 | Soybean | cytosol | 67.86 | 61.11 |
KRH31953 | Soybean | cytosol | 67.86 | 60.93 |
Solyc01g098390.2.1 | Tomato | cytosol | 68.18 | 60.17 |
PGSC0003DMT400073501 | Potato | cytosol | 67.86 | 60.06 |
AT3G05120.1 | Thale cress | cytosol | 67.21 | 60.0 |
KXG21982 | Sorghum | cytosol | 69.16 | 60.0 |
PGSC0003DMT400009831 | Potato | cytosol | 67.21 | 60.0 |
Zm00001d038165_P003 | Maize | cytosol | 68.18 | 59.83 |
Zm00001d010308_P001 | Maize | cytosol, plastid | 67.53 | 59.43 |
Solyc09g074270.2.1 | Tomato | cytosol | 65.91 | 58.84 |
CDY41936 | Canola | cytosol | 66.23 | 58.79 |
TraesCS1D01G254500.1 | Wheat | cytosol | 67.53 | 58.76 |
CDY27795 | Canola | cytosol | 65.91 | 58.67 |
TraesCS1A01G255100.1 | Wheat | cytosol | 67.53 | 58.59 |
TraesCS1B01G265900.1 | Wheat | cytosol | 67.53 | 58.59 |
HORVU1Hr1G060810.1 | Barley | cytosol | 67.21 | 58.47 |
Os05t0407500-01 | Rice | cytosol, nucleus | 66.23 | 57.63 |
CDY67478 | Canola | cytosol | 66.88 | 57.54 |
CDY63333 | Canola | cytosol | 66.56 | 57.26 |
KRH67123 | Soybean | cytosol | 64.29 | 57.23 |
CDX89165 | Canola | cytosol | 66.88 | 57.22 |
VIT_14s0030g00440.t01 | Wine grape | cytosol | 69.48 | 56.76 |
Bra040420.1-P | Field mustard | cytosol | 66.23 | 56.67 |
AT3G63010.1 | Thale cress | cytosol | 65.58 | 56.42 |
Bra007722.1-P | Field mustard | cytosol | 65.58 | 56.42 |
Bra003520.1-P | Field mustard | cytosol | 65.26 | 56.15 |
CDX67913 | Canola | cytosol | 65.26 | 56.15 |
CDX93945 | Canola | extracellular, golgi | 64.29 | 55.62 |
CDY70667 | Canola | cytosol | 64.61 | 55.59 |
Bra039460.1-P | Field mustard | cytosol | 65.91 | 51.26 |
GSMUA_Achr11P... | Banana | cytosol | 35.71 | 35.95 |
GSMUA_Achr2P05600_001 | Banana | plastid | 32.47 | 31.85 |
GSMUA_Achr9P08260_001 | Banana | plastid | 23.05 | 31.42 |
GSMUA_Achr6P29020_001 | Banana | mitochondrion | 32.14 | 29.12 |
GSMUA_Achr6P29040_001 | Banana | plastid | 28.9 | 28.99 |
GSMUA_Achr2P01900_001 | Banana | cytosol | 28.57 | 28.3 |
GSMUA_Achr9P08270_001 | Banana | cytosol, plastid | 29.55 | 27.74 |
GSMUA_Achr8P05900_001 | Banana | cytosol | 24.35 | 27.47 |
GSMUA_Achr6P16980_001 | Banana | mitochondrion | 24.35 | 25.34 |
GSMUA_Achr10P... | Banana | cytosol | 24.03 | 25.08 |
GSMUA_Achr4P04980_001 | Banana | cytosol | 25.97 | 24.77 |
GSMUA_Achr6P32510_001 | Banana | cytosol | 22.73 | 24.22 |
GSMUA_Achr7P16460_001 | Banana | cytosol | 25.32 | 24.07 |
Protein Annotations
Gene3D:3.40.50.1820 | MapMan:35.1 | InterPro:AB_hydrolase | InterPro:AB_hydrolase_3 | GO:GO:0003674 | GO:GO:0003824 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | EnsemblPlantsGene:GSMUA_Achr5G27430_001 | EnsemblPlants:GSMUA_Achr5P27430_001 | EnsemblPlants:GSMUA_Achr5T27430_001 |
InterPro:IPR029058 | InterPro:Lipase_GDXG_HIS_AS | InterPro:Lipase_GDXG_put_SER_AS | UniProt:M0T268 | PFAM:PF07859 | ScanProsite:PS01173 |
ScanProsite:PS01174 | PANTHER:PTHR23024 | PANTHER:PTHR23024:SF227 | SUPFAM:SSF53474 | UniParc:UPI000295C4EF | SEG:seg |
Description
Probable gibberellin receptor GID1L3 [Source:GMGC_GENE;Acc:GSMUA_Achr5G27430_001]
Coordinates
chr5:+:27953076..27955180
Molecular Weight (calculated)
34070.5 Da
IEP (calculated)
7.983
GRAVY (calculated)
-0.107
Length
308 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGSNEVNAN ESKMAVPLNT WVLISNFKLA YNMLRRPDGT FDRHLAEFLD RKVPANATPV NGVISFDVLI GRTSKLLSRI YRPAPSTSAA VPLLADLYQP
101: PSADPFPVII FFHGGSFAHS SSNSAIYDSL CRRFVSLCGA VVVSVNYRRS PEYKYPCAYD DGWAALKWAS AEPWLQSGKD AKFRVFLAGD SSGGNIAHHV
201: AVRAAEDWYW KAYLPEGADR DHPACNPFGP NAAKLDGLPF TKSLIIVAGL DLVQDWQLAY ADGLKKAGHS VKLVYREQAT IGFYLLPNTD HFYQVMDEIK
301: NFVMTNVQ
101: PSADPFPVII FFHGGSFAHS SSNSAIYDSL CRRFVSLCGA VVVSVNYRRS PEYKYPCAYD DGWAALKWAS AEPWLQSGKD AKFRVFLAGD SSGGNIAHHV
201: AVRAAEDWYW KAYLPEGADR DHPACNPFGP NAAKLDGLPF TKSLIIVAGL DLVQDWQLAY ADGLKKAGHS VKLVYREQAT IGFYLLPNTD HFYQVMDEIK
301: NFVMTNVQ
001: MAGSEEVNLI ESKTVVPLNT WVLISNFKLA YNLLRRPDGT FNRHLAEFLD RKVPANANPV NGVFSFDVII DRQTNLLSRV YRPADAGTSP SITDLQNPVD
101: GEIVPVIVFF HGGSFAHSSA NSAIYDTLCR RLVGLCGAVV VSVNYRRAPE NRYPCAYDDG WAVLKWVNSS SWLRSKKDSK VRIFLAGDSS GGNIVHNVAV
201: RAVESRIDVL GNILLNPMFG GTERTESEKR LDGKYFVTVR DRDWYWRAFL PEGEDREHPA CSPFGPRSKS LEGLSFPKSL VVVAGLDLIQ DWQLKYAEGL
301: KKAGQEVKLL YLEQATIGFY LLPNNNHFHT VMDEIAAFVN AECQ
101: GEIVPVIVFF HGGSFAHSSA NSAIYDTLCR RLVGLCGAVV VSVNYRRAPE NRYPCAYDDG WAVLKWVNSS SWLRSKKDSK VRIFLAGDSS GGNIVHNVAV
201: RAVESRIDVL GNILLNPMFG GTERTESEKR LDGKYFVTVR DRDWYWRAFL PEGEDREHPA CSPFGPRSKS LEGLSFPKSL VVVAGLDLIQ DWQLKYAEGL
301: KKAGQEVKLL YLEQATIGFY LLPNNNHFHT VMDEIAAFVN AECQ
Arabidopsis Description
GID1CGID1C [Source:UniProtKB/TrEMBL;Acc:A0A178UKX0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.