Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | cytosol | 71.4 | 71.55 |
| GSMUA_Achr1P21300_001 | Banana | nucleus | 61.59 | 57.17 |
| TraesCS4A01G466700.1 | Wheat | cytosol, nucleus, peroxisome | 37.37 | 54.91 |
| Zm00001d013465_P001 | Maize | cytosol | 70.35 | 53.92 |
| TraesCS4A01G271000.1 | Wheat | cytosol | 69.73 | 53.87 |
| Os03t0707600-01 | Rice | nucleus | 70.15 | 53.76 |
| KRH58636 | Soybean | nucleus | 58.66 | 53.73 |
| TraesCS4D01G040400.1 | Wheat | cytosol | 69.73 | 53.61 |
| KRH42544 | Soybean | cytosol, nucleus, plastid | 57.83 | 53.58 |
| HORVU4Hr1G006930.1 | Barley | nucleus | 69.1 | 53.56 |
| TraesCS4B01G043100.1 | Wheat | cytosol | 69.31 | 53.46 |
| Zm00001d033680_P001 | Maize | nucleus | 69.94 | 53.17 |
| EER93592 | Sorghum | cytosol | 68.68 | 52.47 |
| AT1G14920.1 | Thale cress | nucleus | 57.2 | 51.41 |
| CDY36236 | Canola | cytosol, nucleus, plastid | 57.2 | 49.28 |
| VIT_01s0011g05260.t01 | Wine grape | cytosol | 60.33 | 48.98 |
| Bra024875.1-P | Field mustard | nucleus | 57.62 | 48.17 |
| CDY17662 | Canola | cytosol, nucleus, plastid | 57.41 | 48.08 |
| AT2G01570.1 | Thale cress | mitochondrion, nucleus | 57.62 | 47.02 |
| CDY04092 | Canola | cytosol | 50.73 | 45.51 |
| CDY64837 | Canola | cytosol | 50.94 | 45.02 |
| Bra017443.1-P | Field mustard | cytosol | 50.73 | 44.42 |
| GSMUA_Achr6P34550_001 | Banana | mitochondrion, nucleus, peroxisome, plastid | 46.14 | 36.17 |
| GSMUA_Achr1P16230_001 | Banana | cytosol | 22.55 | 30.34 |
| GSMUA_Achr1P09360_001 | Banana | cytosol | 21.92 | 28.46 |
| GSMUA_Achr8P09690_001 | Banana | cytosol | 26.1 | 28.03 |
| GSMUA_Achr7P16880_001 | Banana | cytosol | 22.13 | 27.97 |
| GSMUA_AchrUn_... | Banana | cytosol | 22.13 | 27.75 |
| GSMUA_Achr1P19470_001 | Banana | nucleus | 21.92 | 27.42 |
| GSMUA_Achr4P23590_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 17.12 | 26.62 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome, plastid | 25.89 | 26.22 |
| GSMUA_Achr8P01180_001 | Banana | nucleus | 24.43 | 25.6 |
| GSMUA_AchrUn_... | Banana | cytosol | 28.18 | 25.23 |
| GSMUA_Achr11P... | Banana | plastid | 30.06 | 25.09 |
| GSMUA_Achr6P17870_001 | Banana | cytosol | 22.96 | 24.66 |
| GSMUA_Achr6P20830_001 | Banana | nucleus | 29.23 | 22.95 |
| GSMUA_Achr10P... | Banana | nucleus | 20.67 | 22.55 |
| GSMUA_Achr3P30530_001 | Banana | cytosol | 27.14 | 22.53 |
| GSMUA_Achr8P09400_001 | Banana | cytosol | 30.27 | 21.58 |
| GSMUA_Achr1P18840_001 | Banana | cytosol | 27.56 | 21.5 |
| GSMUA_Achr4P07320_001 | Banana | cytosol | 24.63 | 21.03 |
| GSMUA_Achr5P21440_001 | Banana | nucleus, plastid | 30.9 | 20.93 |
| GSMUA_Achr7P05850_001 | Banana | mitochondrion | 27.14 | 20.0 |
| GSMUA_Achr4P19750_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 27.56 | 15.31 |
| GSMUA_Achr11P... | Banana | cytosol | 27.35 | 11.89 |
Protein Annotations
| Gene3D:1.10.10.1290 | MapMan:11.6.2.2 | MapMan:15.5.12 | InterPro:DELLA_N_sf | GO:GO:0000989 | GO:GO:0003674 |
| GO:GO:0003712 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:GSMUA_Achr8G18250_001 | EnsemblPlants:GSMUA_Achr8P18250_001 | EnsemblPlants:GSMUA_Achr8T18250_001 | InterPro:IPR005202 | InterPro:IPR038088 | UniProt:M0TRH8 |
| PFAM:PF03514 | PFAM:PF12041 | PFscan:PS50985 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF47 | SMART:SM01129 |
| InterPro:TF_DELLA | InterPro:TF_DELLA_N | InterPro:TF_GRAS | UniParc:UPI000296EB72 | SEG:seg | : |
Description
DELLA protein SLR1 [Source:GMGC_GENE;Acc:GSMUA_Achr8G18250_001]
Coordinates
chr8:+:21934655..21936753
Molecular Weight (calculated)
52132.9 Da
IEP (calculated)
5.741
GRAVY (calculated)
-0.196
Length
479 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRERQETVE AAETEDEKGK ARMDADDGGV DELLAALGYK IRSTEMADVA QKLEQLEMAM GSSVAANDDA LLSHLASDAV HYNPSDVSTW QNSTITTVDV
101: PSGPRCPADA YHLEPLHAPA VAGRIVSPPS SSSTTDAATS PAVLPVVVVD TQESGIRLVH ALMACAEAVQ QDNLKAADAL VKQITVLATS QGGAMRKVAG
201: YFAEALARRI YRPQPARNLS RSTLDFPAFD DMLHQHFYES CPNLKFAHFT ANQAILEAFA GCRRVHVVDF GMREGLQWPA LLQALALRPG GPPSFRLTGI
301: GPPQPDHSDA LQEVGWKLAQ FADTIRVDFR YRGFVAASLA DLEPYMLLGP KVLGTIRAMR PRIVTVVEQE ANHNGETFLE RFTEALHYYS TMFDSLEGGG
401: ADRTERHEAL AQWRVRMGRA GFEPVPIGSN AFKQASMLLA LFAGGDGYRV EEKDGSLTLG WHTRPLITTS AWRIASAAC
101: PSGPRCPADA YHLEPLHAPA VAGRIVSPPS SSSTTDAATS PAVLPVVVVD TQESGIRLVH ALMACAEAVQ QDNLKAADAL VKQITVLATS QGGAMRKVAG
201: YFAEALARRI YRPQPARNLS RSTLDFPAFD DMLHQHFYES CPNLKFAHFT ANQAILEAFA GCRRVHVVDF GMREGLQWPA LLQALALRPG GPPSFRLTGI
301: GPPQPDHSDA LQEVGWKLAQ FADTIRVDFR YRGFVAASLA DLEPYMLLGP KVLGTIRAMR PRIVTVVEQE ANHNGETFLE RFTEALHYYS TMFDSLEGGG
401: ADRTERHEAL AQWRVRMGRA GFEPVPIGSN AFKQASMLLA LFAGGDGYRV EEKDGSLTLG WHTRPLITTS AWRIASAAC
001: MKRDHHHHHH QDKKTMMMNE EDDGNGMDEL LAVLGYKVRS SEMADVAQKL EQLEVMMSNV QEDDLSQLAT ETVHYNPAEL YTWLDSMLTD LNPPSSNAEY
101: DLKAIPGDAI LNQFAIDSAS SSNQGGGGDT YTTNKRLKCS NGVVETTTAT AESTRHVVLV DSQENGVRLV HALLACAEAV QKENLTVAEA LVKQIGFLAV
201: SQIGAMRKVA TYFAEALARR IYRLSPSQSP IDHSLSDTLQ MHFYETCPYL KFAHFTANQA ILEAFQGKKR VHVIDFSMSQ GLQWPALMQA LALRPGGPPV
301: FRLTGIGPPA PDNFDYLHEV GCKLAHLAEA IHVEFEYRGF VANTLADLDA SMLELRPSEI ESVAVNSVFE LHKLLGRPGA IDKVLGVVNQ IKPEIFTVVE
401: QESNHNSPIF LDRFTESLHY YSTLFDSLEG VPSGQDKVMS EVYLGKQICN VVACDGPDRV ERHETLSQWR NRFGSAGFAA AHIGSNAFKQ ASMLLALFNG
501: GEGYRVEESD GCLMLGWHTR PLIATSAWKL STN
101: DLKAIPGDAI LNQFAIDSAS SSNQGGGGDT YTTNKRLKCS NGVVETTTAT AESTRHVVLV DSQENGVRLV HALLACAEAV QKENLTVAEA LVKQIGFLAV
201: SQIGAMRKVA TYFAEALARR IYRLSPSQSP IDHSLSDTLQ MHFYETCPYL KFAHFTANQA ILEAFQGKKR VHVIDFSMSQ GLQWPALMQA LALRPGGPPV
301: FRLTGIGPPA PDNFDYLHEV GCKLAHLAEA IHVEFEYRGF VANTLADLDA SMLELRPSEI ESVAVNSVFE LHKLLGRPGA IDKVLGVVNQ IKPEIFTVVE
401: QESNHNSPIF LDRFTESLHY YSTLFDSLEG VPSGQDKVMS EVYLGKQICN VVACDGPDRV ERHETLSQWR NRFGSAGFAA AHIGSNAFKQ ASMLLALFNG
501: GEGYRVEESD GCLMLGWHTR PLIATSAWKL STN
Arabidopsis Description
GAIDELLA protein GAI [Source:UniProtKB/Swiss-Prot;Acc:Q9LQT8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.