Factsheet for GSMUA_AchrUn_randomP22160_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P01120_001
GSMUA_Achr3P09330_001
GSMUA_Achr3P25040_001
GSMUA_Achr5P07820_001
GSMUA_Achr5P27590_001
GSMUA_Achr6P15990_001
GSMUA_Achr6P23670_001
GSMUA_Achr8P05790_001
GSMUA_Achr9P17280_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66770.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT5G66770.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT5G66770.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT5G66770.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT5G66770.1	GSMUA_Achr11P...	AT2G41090.1	17360592
AT5G66770.1	GSMUA_Achr2P01120_001	AT2G41090.1	17360592
AT5G66770.1	GSMUA_Achr3P09330_001	AT2G41090.1	17360592
AT5G66770.1	GSMUA_Achr3P25040_001	AT2G41090.1	17360592
AT5G66770.1	GSMUA_Achr5P07820_001	AT2G41090.1	17360592
AT5G66770.1	GSMUA_Achr5P27590_001	AT2G41090.1	17360592
AT5G66770.1	GSMUA_Achr6P15990_001	AT2G41090.1	17360592
AT5G66770.1	GSMUA_Achr6P23670_001	AT2G41090.1	17360592
AT5G66770.1	GSMUA_Achr8P05790_001	AT2G41090.1	17360592
AT5G66770.1	GSMUA_Achr9P17280_001	AT2G41090.1	17360592
AT5G66770.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT5G66770.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT5G66770.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT5G66770.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT5G66770.1	GSMUA_Achr11P...	AT5G21274.1	17360592
AT5G66770.1	GSMUA_Achr2P01120_001	AT5G21274.1	17360592
AT5G66770.1	GSMUA_Achr3P09330_001	AT5G21274.1	17360592
AT5G66770.1	GSMUA_Achr3P25040_001	AT5G21274.1	17360592
AT5G66770.1	GSMUA_Achr5P07820_001	AT5G21274.1	17360592
AT5G66770.1	GSMUA_Achr5P27590_001	AT5G21274.1	17360592
AT5G66770.1	GSMUA_Achr6P15990_001	AT5G21274.1	17360592
AT5G66770.1	GSMUA_Achr6P23670_001	AT5G21274.1	17360592
AT5G66770.1	GSMUA_Achr8P05790_001	AT5G21274.1	17360592
AT5G66770.1	GSMUA_Achr9P17280_001	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P30530_001	Banana	cytosol	73.83	68.46
KRH29015	Soybean	cytosol	32.52	61.05
GSMUA_Achr4P07320_001	Banana	cytosol	63.74	60.78
Bra012102.1-P	Field mustard	cytosol	17.38	55.36
KRH24039	Soybean	cytosol	48.41	53.85
TraesCS4B01G054000.1	Wheat	cytosol	51.59	50.46
TraesCS4A01G260600.1	Wheat	cytosol	51.03	50.09
TraesCS4D01G054000.1	Wheat	cytosol	51.03	49.64
KXG37683	Sorghum	cytosol, mitochondrion, peroxisome, plastid	50.84	48.66
Zm00001d033834_P001	Maize	cytosol, plastid	49.91	48.46
AT5G66770.1	Thale cress	cytosol	52.52	48.12
AT3G50650.1	Thale cress	cytosol	48.22	47.6
PGSC0003DMT400038574	Potato	cytosol	54.21	47.46
Zm00001d013385_P001	Maize	cytosol, plastid	50.47	47.45
Os03t0723000-01	Rice	nucleus	51.22	47.4
Solyc02g085340.1.1	Tomato	cytosol	53.46	46.96
CDY72338	Canola	cytosol	49.16	44.96
CDY53846	Canola	cytosol	48.97	44.94
VIT_04s0023g01660.t01	Wine grape	cytosol	50.47	44.05
HORVU4Hr1G008930.3	Barley	cytosol, mitochondrion	27.85	42.21
HORVU4Hr1G008980.3	Barley	mitochondrion, nucleus	41.5	40.14
GSMUA_Achr1P09360_001	Banana	cytosol	23.93	34.69
GSMUA_Achr1P19470_001	Banana	nucleus	24.67	34.46
GSMUA_AchrUn_...	Banana	cytosol	24.3	34.03
GSMUA_Achr7P16880_001	Banana	cytosol	22.8	32.19
GSMUA_Achr1P16230_001	Banana	cytosol	21.12	31.74
GSMUA_Achr8P18250_001	Banana	cytosol	25.23	28.18
GSMUA_Achr8P09690_001	Banana	cytosol	23.18	27.8
GSMUA_Achr6P17870_001	Banana	cytosol	22.8	27.35
GSMUA_Achr10P...	Banana	nucleus	22.43	27.33
GSMUA_Achr10P...	Banana	cytosol	23.93	26.78
GSMUA_Achr4P23590_001	Banana	cytosol, mitochondrion, nucleus, plastid	15.33	26.62
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	22.8	25.79
GSMUA_Achr8P01180_001	Banana	nucleus	21.68	25.38
GSMUA_Achr11P...	Banana	plastid	24.3	22.65
GSMUA_Achr6P34550_001	Banana	mitochondrion, nucleus, peroxisome, plastid	25.42	22.26
GSMUA_Achr6P20830_001	Banana	nucleus	25.23	22.13
GSMUA_Achr1P21300_001	Banana	nucleus	20.93	21.71
GSMUA_Achr1P18840_001	Banana	cytosol	23.93	20.85
GSMUA_Achr8P09400_001	Banana	cytosol	25.61	20.39
GSMUA_Achr7P05850_001	Banana	mitochondrion	24.49	20.15
GSMUA_Achr5P21440_001	Banana	nucleus, plastid	24.67	18.67
GSMUA_Achr4P19750_001	Banana	cytosol, mitochondrion, nucleus, plastid	26.54	16.47
GSMUA_Achr11P...	Banana	cytosol	23.55	11.43

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP22160_001	EnsemblPlants:GSMUA_AchrUn_randomT22160_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG22160_001	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF65	PFAM:PF03514	PFscan:PS50985	SEG:seg	UniParc:UPI000295896A
UniProt:M0UBC4	MapMan:15.5.12	:	:	:	:

Description

Putative Scarecrow-like protein 4 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG22160_001]

Coordinates

chrchrUn_random:-:107984918..107986783

Molecular Weight (calculated)

58226.7 Da

IEP (calculated)

4.748

GRAVY (calculated)

-0.102

Length

535 amino acids

Sequence
(BLAST)

001: MAYMCAESGN LMAIAQQVIQ QQRQQQQQLA ASANPFSTST QPWGASHHHQ QHMSEAAFVI PDAEAAFLEP FTPDRAAGFE APPGGSGHLD QAPFRLCDFR
101: SSSAAVTPEF DTEEWMESLI GESPADNCDL MSDPWQAAAG ASGALFADHD HQYTAVVALN PPGLASETPN TSSPPLLESL LDCARLADGD PDLAAKSLIH
201: VRESASVLGD PTERVAFYFA EALNRRLLGD QKDHSHPSTV AVFNDACPYS KFAHLTANQA IVEATESAAR IHIVDFGIIQ GIQWAALLQA LATRPRGKPS
301: RVRVSGIPAP MLGAAPAASL TATGNRLRDF AAILDLDFEF DPILTPIAEL TVSCFRIDSD EVVVVNFMLQ LYHLLADSPE SVERVLGIAK SLVPRVVTLG
401: EYEASVNRGR FVERFKAALA YYAAVFDSLD PAIRRDSAER AQMERVLLGP RILGAVGAGD GPNRRERMEA KEEWRAVMER CGFEPVPVSN FAVSQAKLLL
501: WNYDYSYKYA VLDSAPGFLT LAWGDRPLLT VSSWR

Best Arabidopsis Sequence Match ( AT5G66770.1 )
(BLAST)

001: MAYMCTDSGN LMAIAQQVIK QKQQQEQQQQ QHHQDHQIFG INPLSLNPWP NTSLGFGLSG SAFPDPFQVT GGGDSNDPGF PFPNLDHHHA TTTGGGFRLS
101: DFGGGTGGGE FESDEWMETL ISGGDSVADG PDCDTWHDNP DYVIYGPDPF DTYPSRLSVQ PSDLNRVIDT SSPLPPPTLW PPSSPLSIPP LTHESPTKED
201: PETNDSEDDD FDLEPPLLKA IYDCARISDS DPNEASKTLL QIRESVSELG DPTERVAFYF TEALSNRLSP NSPATSSSSS STEDLILSYK TLNDACPYSK
301: FAHLTANQAI LEATEKSNKI HIVDFGIVQG IQWPALLQAL ATRTSGKPTQ IRVSGIPAPS LGESPEPSLI ATGNRLRDFA KVLDLNFDFI PILTPIHLLN
401: GSSFRVDPDE VLAVNFMLQL YKLLDETPTI VDTALRLAKS LNPRVVTLGE YEVSLNRVGF ANRVKNALQF YSAVFESLEP NLGRDSEERV RVERELFGRR
501: ISGLIGPEKT GIHRERMEEK EQWRVLMENA GFESVKLSNY AVSQAKILLW NYNYSNLYSI VESKPGFISL AWNDLPLLTL SSWR

Arabidopsis Description

SCL4Scarecrow-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL03]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.