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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, cytosol

Predictor Summary:
  • mitochondrion 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, mitochondrion
Any Predictor:cytosol, mitochondrion
iPSORT:mitochondrion
MultiLoc:cytosol
TargetP:mitochondrion
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU0Hr1G001280.1
HORVU2Hr1G016740.4
HORVU3Hr1G038010.1
HORVU3Hr1G079210.4
HORVU4Hr1G026290.3
HORVU5Hr1G014060.1
HORVU5Hr1G014070.2
HORVU5Hr1G044710.4

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G66770.1 HORVU0Hr1G001280.1 AT2G41090.1 17360592
AT5G66770.1 HORVU2Hr1G016740.4 AT2G41090.1 17360592
AT5G66770.1 HORVU3Hr1G038010.1 AT2G41090.1 17360592
AT5G66770.1 HORVU3Hr1G079210.4 AT2G41090.1 17360592
AT5G66770.1 HORVU4Hr1G026290.3 AT2G41090.1 17360592
AT5G66770.1 HORVU5Hr1G014060.1 AT2G41090.1 17360592
AT5G66770.1 HORVU5Hr1G014070.2 AT2G41090.1 17360592
AT5G66770.1 HORVU5Hr1G044710.4 AT2G41090.1 17360592
AT5G66770.1 HORVU0Hr1G001280.1 AT5G21274.1 17360592
AT5G66770.1 HORVU2Hr1G016740.4 AT5G21274.1 17360592
AT5G66770.1 HORVU3Hr1G038010.1 AT5G21274.1 17360592
AT5G66770.1 HORVU3Hr1G079210.4 AT5G21274.1 17360592
AT5G66770.1 HORVU4Hr1G026290.3 AT5G21274.1 17360592
AT5G66770.1 HORVU5Hr1G014060.1 AT5G21274.1 17360592
AT5G66770.1 HORVU5Hr1G014070.2 AT5G21274.1 17360592
AT5G66770.1 HORVU5Hr1G044710.4 AT5G21274.1 17360592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU4Hr1G008980.3 Barley mitochondrion, nucleus 70.82 45.21
TraesCS4B01G054000.1 Wheat cytosol 67.42 43.51
TraesCS4D01G054000.1 Wheat cytosol 67.14 43.09
TraesCS4A01G260600.1 Wheat cytosol 66.29 42.94
KRH29015 Soybean cytosol 33.71 41.75
Zm00001d033834_P001 Maize cytosol, plastid 58.92 37.75
KXG37683 Sorghum cytosol, mitochondrion, peroxisome, plastid 59.21 37.39
Zm00001d013385_P001 Maize cytosol, plastid 60.06 37.26
Os03t0723000-01 Rice nucleus 59.77 36.51
Bra012102.1-P Field mustard cytosol 14.73 30.95
KRH24039 Soybean cytosol 38.53 28.27
HORVU3Hr1G088820.1 Barley cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 20.68 28.08
GSMUA_Achr3P30530_001 Banana cytosol 45.61 27.9
GSMUA_AchrUn_... Banana cytosol 42.21 27.85
GSMUA_Achr4P07320_001 Banana cytosol 43.91 27.63
AT3G50650.1 Thale cress cytosol 39.94 26.01
AT5G66770.1 Thale cress cytosol 42.21 25.51
Solyc02g085340.1.1 Tomato cytosol 43.63 25.29
PGSC0003DMT400038574 Potato cytosol 43.63 25.2
CDY53846 Canola cytosol 41.08 24.87
VIT_04s0023g01660.t01 Wine grape cytosol 43.06 24.8
CDY72338 Canola cytosol 40.79 24.62
HORVU3Hr1G106260.1 Barley cytosol 12.18 24.02
HORVU2Hr1G113490.1 Barley cytosol 17.85 20.0
HORVU2Hr1G113480.1 Barley cytosol 17.85 20.0
HORVU7Hr1G091000.1 Barley cytosol 23.8 19.72
HORVU6Hr1G033280.1 Barley cytosol 24.08 19.06
HORVU1Hr1G069140.1 Barley cytosol 22.95 17.34
HORVU0Hr1G003230.2 Barley mitochondrion 22.1 16.85
HORVU0Hr1G004640.1 Barley mitochondrion, nucleus, plastid 22.38 16.49
HORVU3Hr1G058100.1 Barley plastid 24.93 15.63
HORVU7Hr1G010620.1 Barley cytosol 24.65 15.45
HORVU1Hr1G090800.1 Barley mitochondrion 22.38 14.74
HORVU4Hr1G006930.1 Barley nucleus 25.78 14.72
HORVU2Hr1G113360.1 Barley cytosol 19.55 14.53
HORVU5Hr1G045920.2 Barley cytosol 23.8 14.36
HORVU3Hr1G088780.2 Barley cytosol 21.25 14.12
HORVU5Hr1G043310.1 Barley cytosol 21.53 13.82
HORVU4Hr1G026010.3 Barley cytosol 17.28 13.68
Protein Annotations
EnsemblPlants:HORVU4Hr1G008930.3EnsemblPlantsGene:HORVU4Hr1G008930GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987InterPro:IPR005202InterPro:TF_GRASncoils:Coil
PANTHER:PTHR31636PANTHER:PTHR31636:SF65PFAM:PF03514PFscan:PS50985SEG:segUniParc:UPI000B4842A3
UniProt:A0A287N4M8MapMan:15.5.12::::
Description
No Description!
Coordinates
chrchr4H:-:25525326..25526610
Molecular Weight (calculated)
30285.1 Da
IEP (calculated)
6.777
GRAVY (calculated)
-0.060
Length
353 amino acids
Sequence
(BLAST)
001: LSPTTYLHGF SSRSRFCGAR AEPCRDSATT ITDTSSXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXA SDEVTLCYKT LNDACPYSKF AHLTANQAIL
101: EATGAATKIH IVDFGIVHGI QWAALLQALA TRPEGKPSRI RISGVPSPYL GPQPAASLAA TSARLRDFAQ LLGVDFEFVP LLRPVHELDL SDFSVEPDEV
201: VAVNFMLXXX XXXXXXXXPV RRVLRLAKSL GPAVVTLGEY EVSLNRAGFV DRFASALSYY RCVFESLDVA MARDSEDRLT LERCMFGERI RRAVGPPEGA
301: DRKDRMAGXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XQKISYAHED LSW
Best Arabidopsis Sequence Match ( AT3G50650.1 )
(BLAST)
001: MAYMCTDSGN LMAIAQQLIK QKQQQQSQHQ QQEEQEQEPN PWPNPSFGFT LPGSGFSDPF QVTNDPGFHF PHLEHHQNAA VASEEFDSDE WMESLINGGD
101: ASQTNPDFPI YGHDPFVSFP SRLSAPSYLN RVNKDDSASQ QLPPPPASTA IWSPSPPSPQ HPPPPPPQPD FDLNQPIFKA IHDYARKPET KPDTLIRIKE
201: SVSESGDPIQ RVGYYFAEAL SHKETESPSS SSSSSLEDFI LSYKTLNDAC PYSKFAHLTA NQAILEATNQ SNNIHIVDFG IFQGIQWSAL LQALATRSSG
301: KPTRIRISGI PAPSLGDSPG PSLIATGNRL RDFAAILDLN FEFYPVLTPI QLLNGSSFRV DPDEVLVVNF MLELYKLLDE TATTVGTALR LARSLNPRIV
401: TLGEYEVSLN RVEFANRVKN SLRFYSAVFE SLEPNLDRDS KERLRVERVL FGRRIMDLVR SDDDNNKPGT RFGLMEEKEQ WRVLMEKAGF EPVKPSNYAV
501: SQAKLLLWNY NYSTLYSLVE SEPGFISLAW NNVPLLTVSS WR
Arabidopsis Description
SCL7Uncharacterized protein At3g50650 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVE0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.