Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- nucleus 1
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G089730.1 | |
| HORVU3Hr1G059830.7 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G50420.1 | HORVU1Hr1G089730.1 | AT4G22220.1 | 21798944 |
| AT1G50420.1 | HORVU3Hr1G059830.7 | AT4G22220.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G534700.1 | Wheat | cytosol | 52.84 | 79.94 |
| TraesCS6D01G055100.1 | Wheat | cytosol | 51.79 | 78.34 |
| TraesCS2A01G532900.1 | Wheat | cytosol | 70.74 | 78.14 |
| TraesCS2B01G562400.1 | Wheat | cytosol | 77.47 | 77.64 |
| HORVU2Hr1G113490.1 | Barley | cytosol | 51.16 | 77.14 |
| HORVU2Hr1G113480.1 | Barley | cytosol | 51.16 | 77.14 |
| HORVU3Hr1G106260.1 | Barley | cytosol | 17.68 | 46.93 |
| Zm00001d037901_P001 | Maize | cytosol, peroxisome, plastid | 40.21 | 41.34 |
| OQU77884 | Sorghum | plasma membrane | 38.53 | 40.22 |
| CDY68881 | Canola | cytosol | 20.21 | 39.34 |
| CDY45059 | Canola | cytosol | 25.05 | 39.14 |
| OQU77885 | Sorghum | cytosol | 38.53 | 37.97 |
| GSMUA_Achr8P09690_001 | Banana | cytosol | 33.26 | 35.43 |
| Bra014251.1-P | Field mustard | cytosol | 31.16 | 33.26 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome, plastid | 33.05 | 33.19 |
| Bra018848.1-P | Field mustard | cytosol | 30.32 | 32.73 |
| CDY22795 | Canola | cytosol, plastid | 30.53 | 32.66 |
| CDY03601 | Canola | cytosol | 30.74 | 32.52 |
| Solyc12g099900.1.1 | Tomato | nucleus | 32.0 | 32.48 |
| PGSC0003DMT400011839 | Potato | cytosol | 32.0 | 32.48 |
| VIT_13s0019g01220.t01 | Wine grape | cytosol | 32.63 | 32.43 |
| Solyc01g008910.2.1 | Tomato | cytosol | 32.42 | 32.35 |
| PGSC0003DMT400058477 | Potato | cytosol | 31.79 | 31.99 |
| KRH24106 | Soybean | cytosol, nucleus, peroxisome | 30.53 | 31.87 |
| VIT_06s0009g02390.t01 | Wine grape | cytosol | 31.79 | 31.86 |
| KRH29080 | Soybean | cytosol | 30.32 | 31.65 |
| AT1G50420.1 | Thale cress | cytosol | 31.58 | 31.12 |
| Os05t0378200-00 | Rice | cytosol | 35.58 | 30.67 |
| HORVU3Hr1G088820.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 16.21 | 29.62 |
| KRH29971 | Soybean | cytosol | 27.37 | 29.41 |
| KRH77666 | Soybean | endoplasmic reticulum, nucleus, peroxisome, plastid | 28.63 | 29.25 |
| KRH62871 | Soybean | cytosol | 27.16 | 29.12 |
| HORVU4Hr1G026010.3 | Barley | cytosol | 26.95 | 28.7 |
| KRH27822 | Soybean | nucleus, plastid | 27.79 | 27.91 |
| HORVU5Hr1G043310.1 | Barley | cytosol | 31.58 | 27.27 |
| HORVU7Hr1G091000.1 | Barley | cytosol | 21.89 | 24.41 |
| HORVU1Hr1G069140.1 | Barley | cytosol | 24.0 | 24.41 |
| HORVU6Hr1G033280.1 | Barley | cytosol | 22.32 | 23.77 |
| HORVU0Hr1G003230.2 | Barley | mitochondrion | 22.95 | 23.54 |
| HORVU3Hr1G088780.2 | Barley | cytosol | 25.47 | 22.79 |
| HORVU3Hr1G058100.1 | Barley | plastid | 25.68 | 21.67 |
| HORVU7Hr1G010620.1 | Barley | cytosol | 25.26 | 21.31 |
| HORVU1Hr1G090800.1 | Barley | mitochondrion | 24.0 | 21.27 |
| HORVU4Hr1G008930.3 | Barley | cytosol, mitochondrion | 14.53 | 19.55 |
| HORVU4Hr1G006930.1 | Barley | nucleus | 24.42 | 18.77 |
| HORVU5Hr1G045920.2 | Barley | cytosol | 22.95 | 18.63 |
| HORVU0Hr1G004640.1 | Barley | mitochondrion, nucleus, plastid | 18.32 | 18.16 |
| HORVU4Hr1G008980.3 | Barley | mitochondrion, nucleus | 20.63 | 17.72 |
| CDY37137 | Canola | plastid | 30.53 | 15.2 |
| GSMUA_Achr11P... | Banana | cytosol | 33.47 | 14.43 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G113360.1 | EnsemblPlantsGene:HORVU2Hr1G113360 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005202 | InterPro:TF_GRAS | PANTHER:PTHR31636 |
| PANTHER:PTHR31636:SF123 | PFAM:PF03514 | PFscan:PS50985 | SEG:seg | UniParc:UPI000295070F | UniProt:M0UVY4 |
| MapMan:15.5.12 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr2H:-:728433055..728469599
Molecular Weight (calculated)
51665.2 Da
IEP (calculated)
6.881
GRAVY (calculated)
-0.076
Length
475 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPENRGQET TGPVYAPVPL RTAWSVDLGN GLNGTFVHSN IDGTATFLLP EVRSAAAPTH PTAPAAAQTQ YEERAIHLIK VLNACADALD KGEKELVNKG
101: LQMICSLASD DGEPLHRLAS LFADAMALRM VQPWQGVCRA LGLQKTTPAP ETAAARRQFA VMCPFLRIAG TAANYAIIKA TQTKNNAVLH VVDLGGANPD
201: QWLLLLRLFA TTRPRAGAHD QILRLTIVNE EDEFLSGTAA LLASEAARLH VGFQFHPVKL NINQLLSIEP LGVRTGEALV IVSTLQLHRL LADEFAEVAA
301: NPHDRKGKKQ VHATMTRADA LLRDLAGLSP KLMVVTEQEA DHNGAEFTGR YRKALKYYGA LLDALQESVP ARGSAVERAG VERCLLLEEI RDIVACEGAQ
401: RRERHEPMLK WAARMDAAGF VPAVMSPDIV AQTGILAHIL AGGSTAYRVS REEDGCLFIY RNDDPMFSVS TWRTV
101: LQMICSLASD DGEPLHRLAS LFADAMALRM VQPWQGVCRA LGLQKTTPAP ETAAARRQFA VMCPFLRIAG TAANYAIIKA TQTKNNAVLH VVDLGGANPD
201: QWLLLLRLFA TTRPRAGAHD QILRLTIVNE EDEFLSGTAA LLASEAARLH VGFQFHPVKL NINQLLSIEP LGVRTGEALV IVSTLQLHRL LADEFAEVAA
301: NPHDRKGKKQ VHATMTRADA LLRDLAGLSP KLMVVTEQEA DHNGAEFTGR YRKALKYYGA LLDALQESVP ARGSAVERAG VERCLLLEEI RDIVACEGAQ
401: RRERHEPMLK WAARMDAAGF VPAVMSPDIV AQTGILAHIL AGGSTAYRVS REEDGCLFIY RNDDPMFSVS TWRTV
001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK
Arabidopsis Description
SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.